Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0942 ATGAGACATGGATCAGAGAAGCTTATTGTTGGGTTCATGACGATGTTGTTTACAACTTTAGTCGTTGCGGCGGCAGAGGATACAACGGACTGTGACCGACAGTGTGGGAGCTTGAAAATTGAGTATCCATTCGGGATGAAGAAAGAGTACTGTTATCTCAATGAAGAATTCTCCATCACCTGCAACGAATCTCATTACAATCCTCCAAAGCCATTTCTATCAAACTCCAATATTGAAATAACCAACATATCCATCACCCAGGGCGAGATCCACATCATGCATTACATAGCCAGAGAATGCTACACAAGAAACAGCACCTTTTCCAGCATACCCTTTCTTGAGATTTCCAACTTCACCATTTCCAACACGAAGAACAAGTTCATCGTCATCGGCTGCGATACTTACGCTTTTATCAATGGGAAAATCGAGGGGGAGCCTTACAAAAGCGGGTGCGTGGCGTTGTGTGATAAGAGTTCTAGATATGTAAGAGATGGGACGTGTTTGGGCAATGGATGCTGTAAGTTGGAGATTCCTAGAGGCTTGACAGATTTGGAGTTGGAGGTTAGGAGCTTTAATAACCACTCTCATGTACTCGACTATAATCCTTGTGGGTATGCGTTTGTAATCCAACAAGATAAATTCACTTTCTCCTCTAAATATATTCACAACTTTGCGCAAGATGAAGTTCCGCTGGTGCTTGATTGGTCCATCCCAACAACAAACTGCTCCACTGCTACGAGCAAAACCAATTGTAGTATTTGTGGACCAAACACAGAAAACATTAACTTTCTCAAGAACGGATCTGAATATCGTTGCAAGTGCTTGGAAGGTTTTGAGGGAAATCCGTATCTCCCTCAAGGTTGCCAAGATATCGATGAATGCAAGAAGGGAAGCAATAAATGTAAATTCAAAAACTTATGTGTTAACATAGCAGGAAACTATACTTGTCGTTGTCCTAAGAACTATAGAGGAGATAGCAGACAGGGAGGAGAAGGTTGCACTCCAAACTTAATTTCTTTCATTCAAATCATTGTCGGAATTGGTGTGGGGTTCATAGTTTTAGTGATCGGTACTATATGGGTTTACTTGGGTTACAAGAAGTGGAAATTTATCCGACAAAAAGAGATGTTTTTTAAGAAAAATGGAGGTATGATGCTTCAACAGCATCTTTCTCAATGGAAATCACCAGACATGCTCCAAATTTTCACCCGAGAAGAGTTGGAGAAAGCTACAGACAAGTACGATGAACGCGCAGTGGTCGGAAAAGGTGGTTTCGGTACCGTTTATAAAGGAGTCTTAGACAACCATTTGACAGTTGCAATCAAGAAATCAAAAGTAATAGATCAATCCCAAACAGATCAATTTATTAATGAAGTCATCGTTCTCTCTCAAATCAACCATCGTAATGTGGTCAAGCTCATAGGCTGTTGTTTGGAGACAAGAGTTCCATTGTTGGTCTATGAGTTTGTTGCAAACGGCACGCTCTTCGATCACATCCACAGCAAAACCAAGGGCACTTATCTTTCGTGGGAGACTCGCTTAAAGATAGCTTCAGAAATTGCAGGCGTCCTCTCGTATTTACACTCTTCAGCTTCAACTCCAATTATCCACCGAGATATCAAGCCCACAAATGTTCTTTTAGACCACGACTTCACTGCAAAAGTCTCTGATTTTGGAACTTCGAAGCTGGTTCCGATGGATCGAGCTCAAATATCCACGATGGTGCAAGGGACTCTCGGATATTTGGATCCTGAATATTTGTTGACAAGTGAGTTGACAGAAAAGAGTGACGTGTATAGCTTTGGAATCCTTCTTCTAGAGCTCTTGACAGGAAAGAAGGCAATGAGTTTCGAGGGGCCGGAAGCGGAGAGAAATGTAGCTATGTATGTTTTGTGTGCAATGAAAGAAGATCGCTTGGTAGAAACTGTGGAGAAGGTAATTGTGAGTGAAGCAAACTTTGAGCAGATAAAAGAAGTGGCAAAGCTAGCAAAGGAGTGTGTGAGAGTAAAAGGGGAGGAACGACCCTGCATGAAAAAGGTAGCTATGGAGTTGGAGGGACTAAGAGCAATGCAAGTTGAAAACAATATGTTCGAAGAAGAAGCTTCAAACTCGACCCAACTTGTTATCCATGATATGGACAATAGCATTAAGGCTGAGGATTTATCATGCATAGAGGATGGAAGATGA 2187 41.7 MRHGSEKLIVGFMTMLFTTLVVAAAEDTTDCDRQCGSLKIEYPFGMKKEYCYLNEEFSITCNESHYNPPKPFLSNSNIEITNISITQGEIHIMHYIARECYTRNSTFSSIPFLEISNFTISNTKNKFIVIGCDTYAFINGKIEGEPYKSGCVALCDKSSRYVRDGTCLGNGCCKLEIPRGLTDLELEVRSFNNHSHVLDYNPCGYAFVIQQDKFTFSSKYIHNFAQDEVPLVLDWSIPTTNCSTATSKTNCSICGPNTENINFLKNGSEYRCKCLEGFEGNPYLPQGCQDIDECKKGSNKCKFKNLCVNIAGNYTCRCPKNYRGDSRQGGEGCTPNLISFIQIIVGIGVGFIVLVIGTIWVYLGYKKWKFIRQKEMFFKKNGGMMLQQHLSQWKSPDMLQIFTREELEKATDKYDERAVVGKGGFGTVYKGVLDNHLTVAIKKSKVIDQSQTDQFINEVIVLSQINHRNVVKLIGCCLETRVPLLVYEFVANGTLFDHIHSKTKGTYLSWETRLKIASEIAGVLSYLHSSASTPIIHRDIKPTNVLLDHDFTAKVSDFGTSKLVPMDRAQISTMVQGTLGYLDPEYLLTSELTEKSDVYSFGILLLELLTGKKAMSFEGPEAERNVAMYVLCAMKEDRLVETVEKVIVSEANFEQIKEVAKLAKECVRVKGEERPCMKKVAMELEGLRAMQVENNMFEEEASNSTQLVIHDMDNSIKAEDLSCIEDGR 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6929149 6935136 + Sed0021482.1 Sed01g0942 700246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0942 728 SUPERFAMILY EGF/Laminin 289 325 - -
Sed01g0942 728 Gene3D Phosphorylase Kinase; domain 1 386 489 - -
Sed01g0942 728 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 29 694 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
Sed01g0942 728 FunFam Fibrillin 2 285 329 - -
Sed01g0942 728 Pfam Protein tyrosine and serine/threonine kinase 419 684 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g0942 728 ProSiteProfiles EGF-like domain profile. 290 328 IPR000742 -
Sed01g0942 728 FunFam Wall-associated receptor kinase 2 385 489 - -
Sed01g0942 728 ProSitePatterns Protein kinases ATP-binding region signature. 420 443 IPR017441 GO:0005524(InterPro)
Sed01g0942 728 Gene3D Laminin 239 333 - -
Sed01g0942 728 Gene3D Transferase(Phosphotransferase) domain 1 490 713 - -
Sed01g0942 728 SMART egf_5 241 289 IPR000742 -
Sed01g0942 728 SMART egf_5 293 334 IPR000742 -
Sed01g0942 728 FunFam Wall-associated receptor kinase 2 490 707 - -
Sed01g0942 728 ProSitePatterns Serine/Threonine protein kinases active-site signature. 535 547 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g0942 728 ProSitePatterns Calcium-binding EGF-like domain signature. 290 316 IPR018097 GO:0005509(InterPro)
Sed01g0942 728 CDD EGF_CA 290 326 - -
Sed01g0942 728 SMART egfca_6 290 334 IPR001881 GO:0005509(InterPro)
Sed01g0942 728 Pfam Calcium-binding EGF domain 290 327 IPR049883 -
Sed01g0942 728 CDD STKc_IRAK 420 687 - -
Sed01g0942 728 SMART serkin_6 414 667 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0942 728 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 307 318 IPR000152 -
Sed01g0942 728 ProSiteProfiles Protein kinase domain profile. 414 687 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0942 728 Pfam Wall-associated receptor kinase galacturonan-binding 31 92 IPR025287 GO:0030247(InterPro)
Sed01g0942 728 SUPERFAMILY Protein kinase-like (PK-like) 391 684 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0942 Sed-Chr1:6929149 Sed10g2083 Sed-Chr10:37283960 2.50E-185 dispersed
Sed01g0940 Sed-Chr1:6879504 Sed01g0942 Sed-Chr1:6929149 2.40E-267 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78585 PF00069 Pkinase 1.30E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0942 - - - 0.0