Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0943 ATGGCCTTTCATTGCGCTCATTACTCGTTTTCACCATCGCCACCCAAACCCAAGTTCCATTTAGTGCACAGGAACAACCCTGCTATTCTGTTTTCTTCCCACAATACTCTCGTCTCTGAGGCTGTTAGGATATTGGTTCCTCCTGCAAGATTTGAAGCTTCAAAGTTAAAAGTTGTATTCACTAGGGAGGTGAACAAGTCTACAGGAATCATCCCAAGAACATATATACTATCACATTGTGACTTTACTGCTAATCTCACCTTAACCATTTCTGATGTTATCAACCTTGATCAGTTGAGAGGGTGGTACAACAAGGATGACGTGGTTGCTGAGTGGAAGAAAGTGAAGGATGAAATGTGTCTTCATGTACATTGCTATGTGAGCGGCCCTAATTTCTTGCTTGACCTTACTGCAGAGTTTAGATACAGCATATTCTCCAAAGAATTGCCTCTTGTGCTTCAATCTGTTCTATTATGGGATTCAATTCTGTTTGGGGAGAATCCTGAGCTGCTAGATTCCTTGGTCAGGGTATATTTCCATTCCAGTTCACAAAAGTACAATCGACTCGAATGCTGGGGCCCACTCAAGGATGTTGTACAGGGTAGGCATCATCATGTGCAAGGAGTCCTAAGGGGGGAGGCAAGGATGTGTCCACTCCTATAA 663 43.29 MAFHCAHYSFSPSPPKPKFHLVHRNNPAILFSSHNTLVSEAVRILVPPARFEASKLKVVFTREVNKSTGIIPRTYILSHCDFTANLTLTISDVINLDQLRGWYNKDDVVAEWKKVKDEMCLHVHCYVSGPNFLLDLTAEFRYSIFSKELPLVLQSVLLWDSILFGENPELLDSLVRVYFHSSSQKYNRLECWGPLKDVVQGRHHHVQGVLRGEARMCPLL 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6990892 6993790 + Sed0005591.1 Sed01g0943 700247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0943 220 PANTHER PROTEIN STAY-GREEN 1, CHLOROPLASTIC-RELATED 33 199 - -
Sed01g0943 220 Pfam Staygreen protein 50 197 IPR024438 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0943 K22013 - - csv:101219336 369.777
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0851 Sed-Chr5:6785774 Sed01g0943 Sed-Chr1:6990892 3.00E-45 transposed
Sed01g0943 Sed-Chr1:6990892 Sed03g0442 Sed-Chr3:2645589 7.90E-103 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g187 Blo01g01313 . Bda01g00683 . Bpe02g00622 . . Bma01g02097 Cmo04g02523 Cmo15g00651 . . . . Sed01g0943 . . Bhi04g01844 Tan11g1216 Cmetu09g0061 . Hepe02g2741 . Lcy10g1292 Cla08g00644 Cam08g1066 Cec08g0651 Cco08g0762 Clacu08g0772 . Cre08g0580 . . . Cone20ag0416 . . . Cme03g00440 . . . . . . . . . . . . . Car04g02320 Car15g00589 Cpe01g02086 . . . . . . . . . . . . . . . Lsi08g00503 . Chy03g00556 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008497 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35