Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0951 ATGTTTTCGAGAGATTCTAACGTTCTGTTCAGTGGCGGCGGTATCAGTTTTCTCTATGAAAATCATACTGGAAAGTTCAGCTATGGCTATTCTAGTTTCAAGGGTAAAAGGGCTTCGATGGAGGACTTTTATGAAACTAGAATTTCTGAAGTCGATGGGCAGATGGTCGCTTTTTTTGGTGTTTTTGATGGTCATGGGGGTTCCAGAACAGCTGAATACCTTAAGCGCAATCTTTTCAACAACCTAAGTAGCCATCCAGACTTTATCAAAGACACAAAGACAGCTATAGTTGAGGTTTTTAGACAAACAGATGCTGATTATATTAATGAAGAGAGAGGGCAGCAGAAAGATGCCGGGTCAACTGCATCAACTGCTGTCCTGTTGGGGGATCGTCTCCTTGTTGCTAATGTTGGGGATTCCAGAGTAGTTGCATCTAGAGCTGGTTCAGCTATTCCCCTCTCTAATGATCACAAACCTGATAGATTAGATGAACGGGAAAGGATTGAACAAGCTGGAGGTTTCATTCTTTGGGCAGGAACTTGGAGAGTTGGTGGTATTCTAGCAGTTTCACGTGCCTTTGGAGACAAACTACTCAAACCGTATGTTGTTGCTGATCCCGAAATAAAGGAAGAAGAAATCGACAATGTAGATTTTATTATTATTGCAAGCGATGGACTTTGGAATGTCATATCTAATGAGGAAGCTGTAGCATTAGTGCAACACATCCAAGACACAGAAATGGCGTCAAGAAAACTGATCCAAGAAGCTTATGCTCGAGGGAGTACCGACAACATTACATGTGTCATCGTACAATTTGGTTTATCATAG 828 41.67 MFSRDSNVLFSGGGISFLYENHTGKFSYGYSSFKGKRASMEDFYETRISEVDGQMVAFFGVFDGHGGSRTAEYLKRNLFNNLSSHPDFIKDTKTAIVEVFRQTDADYINEERGQQKDAGSTASTAVLLGDRLLVANVGDSRVVASRAGSAIPLSNDHKPDRLDERERIEQAGGFILWAGTWRVGGILAVSRAFGDKLLKPYVVADPEIKEEEIDNVDFIIIASDGLWNVISNEEAVALVQHIQDTEMASRKLIQEAYARGSTDNITCVIVQFGLS 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7056172 7060859 - Sed0001528.1 Sed01g0951 700255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0951 275 Gene3D - 18 274 IPR036457 -
Sed01g0951 275 PANTHER PROTEIN PHOSPHATASE 27 270 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed01g0951 275 Pfam Protein phosphatase 2C 28 265 IPR001932 -
Sed01g0951 275 SMART PP2C_4 20 270 IPR001932 -
Sed01g0951 275 SUPERFAMILY PP2C-like 23 272 IPR036457 -
Sed01g0951 275 FunFam probable protein phosphatase 2C 59 19 274 - -
Sed01g0951 275 ProSitePatterns PPM-type phosphatase domain signature. 58 66 IPR000222 GO:0043169(InterPro)
Sed01g0951 275 ProSiteProfiles PPM-type phosphatase domain profile. 27 272 IPR001932 -
Sed01g0951 275 CDD PP2Cc 26 272 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0951 Sed-Chr1:7056172 Sed05g1813 Sed-Chr5:31743957 4.20E-101 dispersed
Sed01g0951 Sed-Chr1:7056172 Sed01g0952 Sed-Chr1:7056172 6.10E-153 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0951 K17506 - csv:101220053 509.22