Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0952 ATGTTTTCGAGAGATTCTAACGTTCTGTTCAGTGGCGGCGGTATCAGTTTTCTCTATGAAAATCATACTGGAAAGTTCAGCTATGGCTATTCTAGTTTCAAGGGTAAAAGGGCTTCGATGGAGGACTTTTATGAAACTAGAATTTCTGAAGTCGATGGGCAGATGGTCGCTTTTTTTGGTGTTTTTGATGGTCATGGGGGTTCCAGAACAGCTGAATACCTTAAGCGCAATCTTTTCAACAACCTAAGTAGCCATCCAGACTTTATCAAAGACACAAAGACAGCTATAGTTGAGGTTTTTAGACAAACAGATGCTGATTATATTAATGAAGAGAGAGGGCAGCAGAAAGATGCCGGGTCAACTGCATCAACTGCTGTCCTGTTGGGGGATCGTCTCCTTGTTGCTAATGTTGGGGATTCCAGAGTAGTTGCATCTAGAGCTGGTTCAGCTATTCCCCTCTCTAATGATCACAAACCTGATAGATTAGATGAACGGGAAAGGATTGAACAAGCTGGAGGTTTCATTCTTTGGGCAGCTAAACTTAACCCAGGAACTTGGAGAGTTGGTGGTATTCTAGCAGTTTCACGTGCCTTTGGAGACAAACTACTCAAACCGTATGTTGTTGCTGATCCCGAAATAAAGGAAGAAGAAATCGACAATGTAGATTTTATTATTATTGCAAGCGATGGACTTTGGAATGTCATATCTAATGAGGAAGCTGTAGCATTAGTGCAACACATCCAAGACACAGAAATGGCGTCAAGAAAACTGATCCAAGAAGCTTATGCTCGAGGGAGTACCGACAACATTACATGTGTCATCGTACAATTTGGTTTATCATAG 843 41.64 MFSRDSNVLFSGGGISFLYENHTGKFSYGYSSFKGKRASMEDFYETRISEVDGQMVAFFGVFDGHGGSRTAEYLKRNLFNNLSSHPDFIKDTKTAIVEVFRQTDADYINEERGQQKDAGSTASTAVLLGDRLLVANVGDSRVVASRAGSAIPLSNDHKPDRLDERERIEQAGGFILWAAKLNPGTWRVGGILAVSRAFGDKLLKPYVVADPEIKEEEIDNVDFIIIASDGLWNVISNEEAVALVQHIQDTEMASRKLIQEAYARGSTDNITCVIVQFGLS 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7056172 7060859 - Sed0001528.2 Sed01g0952 700256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0952 280 CDD PP2Cc 26 277 IPR001932 -
Sed01g0952 280 PANTHER PROTEIN PHOSPHATASE 27 275 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed01g0952 280 SUPERFAMILY PP2C-like 23 277 IPR036457 -
Sed01g0952 280 SMART PP2C_4 20 275 IPR001932 -
Sed01g0952 280 Pfam Protein phosphatase 2C 28 270 IPR001932 -
Sed01g0952 280 FunFam probable protein phosphatase 2C 59 19 279 - -
Sed01g0952 280 Gene3D - 22 279 IPR036457 -
Sed01g0952 280 ProSitePatterns PPM-type phosphatase domain signature. 58 66 IPR000222 GO:0043169(InterPro)
Sed01g0952 280 ProSiteProfiles PPM-type phosphatase domain profile. 27 277 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0952 Sed-Chr1:7056172 Sed05g1813 Sed-Chr5:31743957 5.20E-99 dispersed
Sed01g0951 Sed-Chr1:7056172 Sed01g0952 Sed-Chr1:7056172 6.10E-153 tandem
Sed01g0952 Sed-Chr1:7056172 Sed01g0953 Sed-Chr1:7056172 1.50E-98 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0952 K17506 - csv:101220053 503.056