Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0953 ATGTTTTCGAGAGATTCTAACGTTCTGTTCAGTGGCGGCGGTATCAGTTTTCTCTATGAAAATCATACTGGAAAGTTCAGCTATGGCTATTCTAGTTTCAAGGGTAAAAGGGCTTCGATGGAGGACTTTTATGAAACTAGAATTTCTGAAGTCGATGGGCAGATGGTCGCTTTTTTTGGTGTTTTTGATGGTCATGGGGGTTCCAGAACAGCTGAATACCTTAAGCGCAATCTTTTCAACAACCTAAGTAGCCATCCAGACTTTATCAAAGACACAAAGACAGCTATAGTTGAGGTTTTTAGACAAACAGATGCTGATTATATTAATGAAGAGAGAGGGCAGCAGAAAGATGCCGGGTCAACTGCATCAACTGCTGTCCTGTTGGGGGATCGTCTCCTTGTTGCTAATGTTGGGGATTCCAGAGTAGTTGCATCTAGAGCTGGTTCAGCTATTCCCCTCTCTAATGATCACAAACCTGATAGATTAGATGAACGGGAAAGGATTGAACAAGCTGGAGGTTTCATTCTTTGGGCAGGTAAAGCCTTGCATCTGACTCAATTGTTTACTTCTGTTTTTAATGATACAGCCACATTCCACGGGGTTCATAATAAATAA 615 41.63 MFSRDSNVLFSGGGISFLYENHTGKFSYGYSSFKGKRASMEDFYETRISEVDGQMVAFFGVFDGHGGSRTAEYLKRNLFNNLSSHPDFIKDTKTAIVEVFRQTDADYINEERGQQKDAGSTASTAVLLGDRLLVANVGDSRVVASRAGSAIPLSNDHKPDRLDERERIEQAGGFILWAGKALHLTQLFTSVFNDTATFHGVHNK 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7056172 7060859 - Sed0001528.3 Sed01g0953 700257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0953 204 CDD PP2Cc 26 175 IPR001932 -
Sed01g0953 204 Pfam Protein phosphatase 2C 28 177 IPR001932 -
Sed01g0953 204 SUPERFAMILY PP2C-like 23 181 IPR036457 -
Sed01g0953 204 SMART PP2C_4 20 201 IPR001932 -
Sed01g0953 204 Gene3D - 18 197 IPR036457 -
Sed01g0953 204 PANTHER PROTEIN PHOSPHATASE 25 179 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed01g0953 204 ProSiteProfiles PPM-type phosphatase domain profile. 27 204 IPR001932 -
Sed01g0953 204 ProSitePatterns PPM-type phosphatase domain signature. 58 66 IPR000222 GO:0043169(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0953 Sed-Chr1:7056172 Sed05g1813 Sed-Chr5:31743957 4.50E-60 dispersed
Sed01g0952 Sed-Chr1:7056172 Sed01g0953 Sed-Chr1:7056172 1.50E-98 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0953 K17506 - csv:101220053 337.806