Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g0953 | ATGTTTTCGAGAGATTCTAACGTTCTGTTCAGTGGCGGCGGTATCAGTTTTCTCTATGAAAATCATACTGGAAAGTTCAGCTATGGCTATTCTAGTTTCAAGGGTAAAAGGGCTTCGATGGAGGACTTTTATGAAACTAGAATTTCTGAAGTCGATGGGCAGATGGTCGCTTTTTTTGGTGTTTTTGATGGTCATGGGGGTTCCAGAACAGCTGAATACCTTAAGCGCAATCTTTTCAACAACCTAAGTAGCCATCCAGACTTTATCAAAGACACAAAGACAGCTATAGTTGAGGTTTTTAGACAAACAGATGCTGATTATATTAATGAAGAGAGAGGGCAGCAGAAAGATGCCGGGTCAACTGCATCAACTGCTGTCCTGTTGGGGGATCGTCTCCTTGTTGCTAATGTTGGGGATTCCAGAGTAGTTGCATCTAGAGCTGGTTCAGCTATTCCCCTCTCTAATGATCACAAACCTGATAGATTAGATGAACGGGAAAGGATTGAACAAGCTGGAGGTTTCATTCTTTGGGCAGGTAAAGCCTTGCATCTGACTCAATTGTTTACTTCTGTTTTTAATGATACAGCCACATTCCACGGGGTTCATAATAAATAA | 615 | 41.63 | MFSRDSNVLFSGGGISFLYENHTGKFSYGYSSFKGKRASMEDFYETRISEVDGQMVAFFGVFDGHGGSRTAEYLKRNLFNNLSSHPDFIKDTKTAIVEVFRQTDADYINEERGQQKDAGSTASTAVLLGDRLLVANVGDSRVVASRAGSAIPLSNDHKPDRLDERERIEQAGGFILWAGKALHLTQLFTSVFNDTATFHGVHNK | 204 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 7056172 | 7060859 | - | Sed0001528.3 | Sed01g0953 | 700257 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g0953 | 204 | CDD | PP2Cc | 26 | 175 | IPR001932 | - | |
Sed01g0953 | 204 | Pfam | Protein phosphatase 2C | 28 | 177 | IPR001932 | - | |
Sed01g0953 | 204 | SUPERFAMILY | PP2C-like | 23 | 181 | IPR036457 | - | |
Sed01g0953 | 204 | SMART | PP2C_4 | 20 | 201 | IPR001932 | - | |
Sed01g0953 | 204 | Gene3D | - | 18 | 197 | IPR036457 | - | |
Sed01g0953 | 204 | PANTHER | PROTEIN PHOSPHATASE | 25 | 179 | IPR015655 | GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Sed01g0953 | 204 | ProSiteProfiles | PPM-type phosphatase domain profile. | 27 | 204 | IPR001932 | - | |
Sed01g0953 | 204 | ProSitePatterns | PPM-type phosphatase domain signature. | 58 | 66 | IPR000222 | GO:0043169(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0953 | Sed-Chr1:7056172 | Sed05g1813 | Sed-Chr5:31743957 | 4.50E-60 | dispersed | |
Sed01g0952 | Sed-Chr1:7056172 | Sed01g0953 | Sed-Chr1:7056172 | 1.50E-98 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g0953 | K17506 | - | csv:101220053 | 337.806 |