Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0954 ATGGTTCAGGCGGAGGGAAGAGGCAGTGCCGTTGGTAGAGCCGTCGTTGTCGCTGCCGCCGTTGTCGGGTTGGTTATGATGTCTCAGTTGGGGAGCGTTGAGGCGGCCGTTTTCATTGTCGGCGACGGCGGCGGATGGACTTTTAACGTCCAAAATTGGCCCAACGGAAAACGGTTTCGTGCCGGTGACATTCTCAAGTTTAATTACAGCCCATCTTATCATAACGTGGTGGTGGTTGACAACGGTGGTTACAAAAACTGCGTAGCTCCGGCGGGTGCGAAAGTGTTCAGTTCCGGCAACGACCAGATAAGGCTGCCAAAGGGACCCTCCTATTATATCTGCACCTTTCCCGGCCACTGTGAATCCGGCATGAAGATCGCCGTTAATGCTGCCTAA 396 54.04 MVQAEGRGSAVGRAVVVAAAVVGLVMMSQLGSVEAAVFIVGDGGGWTFNVQNWPNGKRFRAGDILKFNYSPSYHNVVVVDNGGYKNCVAPAGAKVFSSGNDQIRLPKGPSYYICTFPGHCESGMKIAVNAA 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7062571 7065409 - Sed0011445.1 Sed01g0954 700258

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0954 131 ProSitePatterns Type-1 copper (blue) proteins signature. 108 124 IPR028871 -
Sed01g0954 131 SUPERFAMILY Cupredoxins 36 130 IPR008972 -
Sed01g0954 131 CDD Plantacyanin 36 130 IPR041844 -
Sed01g0954 131 Pfam Plastocyanin-like domain 46 124 IPR003245 GO:0009055(InterPro)
Sed01g0954 131 FunFam basic blue protein-like 36 130 - -
Sed01g0954 131 PANTHER BLUE COPPER PROTEIN 28 129 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Sed01g0954 131 Gene3D - 34 131 IPR008972 -
Sed01g0954 131 ProSiteProfiles Phytocyanin domain profile. 36 131 IPR003245 GO:0009055(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0954 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0954 Sed-Chr1:7062571 Sed13g0521 Sed-Chr13:3577632 1.90E-35 dispersed
Sed01g0954 Sed-Chr1:7062571 Sed03g0448 Sed-Chr3:2680290 2.20E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1192 Blo01g01321 . Bda01g00688 . Bpe02g00618 . . Bma01g02106 . Cmo15g00642 . . . . Sed01g0954 . . Bhi04g01831 Tan11g1205 Cmetu03g0089 . Hepe02g2751 . Lcy10g1303 . . . . . . . . . . Cone20ag0408 . . . Cme03g00426 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00269 . Chy03g00573 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000300 8 5 4 2 2 5 6 3 5 4 3 5 8 4 4 7 5 4 3 4 4 5 2 4 6 5 4 8 6 4 139