Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0961 ATGACGTCTCATAATGTTGAGGGCTCTCCAGGAAGCTCCATGCATGGAGTTACTGGAAGAGAACAGACCTTTGCGTTCTCCGTTGCTTCCCCGATTGTCCCCACCGACACGACTGCGAAGTTTGCTCTTCCGGTTGATTCGGAGCACAAGGCTAAGGTGTTCAAGCTCTTCTCTTTGGCCAACCCCCACATGAGAACCTTCCACCTCTCCTGGATCTCCTTCTTCACCTGCTTCGTCTCCACCTTCGCTGCCGCCCCTCTCGTCCCCATCATCCGCGACAACCTCAACTTGACCAAGGTCGACATCGGTAACGCTGGTGTCACCTCTGTCTCCGGCAGCATCTTCTCCCGTCTCGTCATGGGCGCTGTCTGTGACCTCTTGGGCCCTCGCTACGGCTGTGCCTTCCTCATCATGCTCACTGCCCCCACCCGAGGGCCCAAGAGGTCACAGACAGCGCCCATGACGAGACGGGAGAAGATGCTGCCGGAGACAGAGGTGACACCAGCGTTACCGATGTCGACCTTGGTCAAGTTGAGGTTGTCGCGGATGATGGGGACGAGAGGGGCGGCAGCGAAGGTGGAGACGAAGCAGGTGAAGAAGGAGATCCAGGAGAGGTGGAAGGTTCTCATGTGGGGGTTGGCCAAAGAGAAGAGCTTGAACACCTTAGCCTTGTGCTCCGAATCAACCGGAAGAGCAAACTTCGCAGTCGTGTCGGTGGGGACAATCGGGGAAGCAACGGAGAACGCGAAGGTCTGCTCTCTTCCAGTAACTCCATGCATGGAGCTTCCAGGAGAGCCCTCAACATAA 807 57.0 MTSHNVEGSPGSSMHGVTGREQTFAFSVASPIVPTDTTAKFALPVDSEHKAKVFKLFSLANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKVDIGNAGVTSVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLTAPTRGPKRSQTAPMTRREKMLPETEVTPALPMSTLVKLRLSRMMGTRGAAAKVETKQVKKEIQERWKVLMWGLAKEKSLNTLALCSESTGRANFAVVSVGTIGEATENAKVCSLPVTPCMELPGEPST 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7123548 7131050 + Sed0005833.1 Sed01g0961 700265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0961 268 SUPERFAMILY MFS general substrate transporter 61 141 IPR036259 -
Sed01g0961 268 Gene3D MFS general substrate transporter like domains 60 144 IPR036259 -
Sed01g0961 268 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 9 143 IPR044772 GO:0005886(PANTHER)|GO:0015112(PANTHER)|GO:0015112(InterPro)|GO:0015706(PANTHER)|GO:0071249(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0961 Sed-Chr1:7123548 Sed04g0617 Sed-Chr4:4772672 2.80E-33 dispersed
Sed01g0961 Sed-Chr1:7123548 Sed01g0962 Sed-Chr1:7143676 1.20E-76 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0961 K02575 - csv:101218006 273.863