Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0962 ATGACGTCTCATACTGTTGAGGGCTCTCCAGGAAGCTCCATGCATGGAGTTACTGGAAGAGAGCAGACCTTCGCGTTCTCCGTTGCTTCCCCGATTGTCCCCACCGACACGACTGCGAAGTTTGCTCTTCCGGTTGATTCGGAGCACAAGGCTAAGGTGTTCAAGCTCTTCTCTTTGGCCAACCCCCACATGAGAACCTTCCACCTCTCCTGGATCTCCTTCTTCACCTGCTTCGTCTCCACCTTCGCTGCCGCCCCTCTCGTCCCCATCATCCGCGACAACCTCAACTTGACCAAGGTCGACATCGGTAACGCTGGTGTCACCTCTGTCTCCGGCAGCATCTTCTCCCGTCTCGTCATGGGTGCTGTCTGTGACCTCTTGGGCCCTCGCTACGGCTGTGCCTTCCTCATCATGCTCACTGCCCCCACCGTCTTCTGCATGTCCTTTGTTTCCTCCGCTGGGGGCTACATAGCCGTCCGCTTCATGATCGGGTTCTCCCTGGCCACCTTCGTGTCGTGCCAGTACTGGATGAGCACCATGTTCAACAGCCAGATCATCGGGCTCGTGAACGGCACTGCGGCGGGTTGGGGGAACATGGGAGGAGGAGCCACTCAGCTCATCATGCCTCTGTTGTTTGATGTTATTCAGAGAGCTGGTGCAACCCCTTTCACTGCTTGGAGGATTGCCTTCTTCATCCCTGGTTGGCTTCATGTTATTATGGGTATTTTAGTTCTCACTCTTGGCCAAGACTTGCCCGATGGCAATCTCAGCAGCCTTCAGAAGAAGGGAAACGTTACCAAAGATAAATTCTCCAACGTGCTATGGTATGCTGTTACTAACTATAGAACTTGGATCTTTGTCCTCCTCTATGGCTACTCCATGGGGGTTGAACTTTCCACCGATAACGTTATCGCTGAATATTTCTACGATAGATTTGACCTAAAGCTGCACCTGGCTGGAATCATCGCAGCAACGTTCGGCATGGCTAACCTCGTGGCTCGACCCTTTGGAGGTTGGGCCTCCGACTACGCAGCTCGAAAGTTCGGGATGAGAGGAAGACTGTGGACCCTTTGGATTCTCCAAACATTTGGTGGAGTGTTCTGCATGTGGCTTGGGAAAGCAAACAAGCTCCCAACCGCCATAACAGCAATGATCTTGTTCTCCATAGGAGCTCAAGCCGCATGTGGAGCCACTTTTGGAATCATTCCCTTCATTTCTCGGCGCTCGTTAGGGATTATATCGGGACTCACAGGAGCAGGAGGAAACTTCGGATCCGGATTAACCCAATTAGTGTTCTTCTCCACCTCGAAATACACAACCGACAGAGGGTTGTTTTATATGGGGATAATGATCGTGTGTTGCACAATGCCAGTGACATTGGTGCACTTCCCTCAATGGGGGGGCATGTTCCTACCACCCACAAAACACGTAGAGAAATCCACAGAAGAATTCTACTACGGATCTGAATGGACGGAGGATGAAAAGAAGAAGGGTTTGCACCAACAAAGCATCAAGTTTGCTGAGAACAGCAGGTCTGAACGCGGAAGGCGTGTGGGCTCAGCTCCGACTCCGCCGAATACCACCCCTTCTCGTGTTTGA 1599 52.16 MTSHTVEGSPGSSMHGVTGREQTFAFSVASPIVPTDTTAKFALPVDSEHKAKVFKLFSLANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKVDIGNAGVTSVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLTAPTVFCMSFVSSAGGYIAVRFMIGFSLATFVSCQYWMSTMFNSQIIGLVNGTAAGWGNMGGGATQLIMPLLFDVIQRAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLSSLQKKGNVTKDKFSNVLWYAVTNYRTWIFVLLYGYSMGVELSTDNVIAEYFYDRFDLKLHLAGIIAATFGMANLVARPFGGWASDYAARKFGMRGRLWTLWILQTFGGVFCMWLGKANKLPTAITAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLVFFSTSKYTTDRGLFYMGIMIVCCTMPVTLVHFPQWGGMFLPPTKHVEKSTEEFYYGSEWTEDEKKKGLHQQSIKFAENSRSERGRRVGSAPTPPNTTPSRV 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7143676 7145643 - Sed0026609.1 Sed01g0962 700266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0962 532 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 9 517 IPR044772 GO:0005886(PANTHER)|GO:0015112(PANTHER)|GO:0015112(InterPro)|GO:0015706(PANTHER)|GO:0071249(PANTHER)
Sed01g0962 532 FunFam Nitrate transporter 2.1 267 468 - -
Sed01g0962 532 Gene3D MFS general substrate transporter like domains 266 467 IPR036259 -
Sed01g0962 532 FunFam High affinity nitrate transporter 59 256 - -
Sed01g0962 532 SUPERFAMILY MFS general substrate transporter 61 465 IPR036259 -
Sed01g0962 532 Pfam Major Facilitator Superfamily 71 427 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Sed01g0962 532 MobiDBLite consensus disorder prediction 492 515 - -
Sed01g0962 532 MobiDBLite consensus disorder prediction 492 532 - -
Sed01g0962 532 CDD MFS_NRT2_like 67 460 IPR044772 GO:0015112(InterPro)
Sed01g0962 532 Gene3D MFS general substrate transporter like domains 60 256 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0962 Sed-Chr1:7143676 Sed04g0617 Sed-Chr4:4772672 1.60E-170 dispersed
Sed01g0961 Sed-Chr1:7123548 Sed01g0962 Sed-Chr1:7143676 1.20E-76 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0962 K02575 - csv:101218006 1022.31