Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0981 ATGGAGAAAAGTAAAGCAAATATGGGCGGCGGAAGCGGCGGGGTTAGTAGTCCCTGCGCCGCGTGCAAGATTCTACGGCGGCGATGCAGAGAGAATTGTGAATTGGGGCCGTATTTCCCATCTAATGATCCTCTCAAATTCACCATTGCCCATAAGGTCTTTGGTGCAAGCAACATCATCAAGTTACTTCAGGATCTTCCTACGTCGCAAAGAGCAGATGCAGTGAATAGTATAGTATATGAAGCCAATGCAAGAATAAGAGATCCCATATATGGATGTGCAGGCTCAATCTTCCAACTCCAAAGACAAATAAATGGCCTACAAGCAGAGCTAGCCAAGGCTCAAGCAGAGCTTCTCAACATGCAATGTCAACAAGCTAGTTTGGTGACTCTAATTTGCAAGCAATTGACTCAAATGCCACAACCACCAATTTATGAACAACAATCATTTGATGACATTTTCAACATTGGTAGCCCTCAAAGCTATCAGAGCTATTCATACTTGTTTGAGGATACTACTATTTTGGACCCTCTTTGGACTTAG 543 43.46 MEKSKANMGGGSGGVSSPCAACKILRRRCRENCELGPYFPSNDPLKFTIAHKVFGASNIIKLLQDLPTSQRADAVNSIVYEANARIRDPIYGCAGSIFQLQRQINGLQAELAKAQAELLNMQCQQASLVTLICKQLTQMPQPPIYEQQSFDDIFNIGSPQSYQSYSYLFEDTTILDPLWT 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7263903 7265706 - Sed0013656.1 Sed01g0981 700285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0981 180 Pfam Lateral organ boundaries (LOB) domain 18 115 IPR004883 -
Sed01g0981 180 ProSiteProfiles LOB domain profile. 17 118 IPR004883 -
Sed01g0981 180 Coils Coil 97 124 - -
Sed01g0981 180 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 16 134 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0981 Sed-Chr1:7263903 Sed07g2403 Sed-Chr7:39877444 3.20E-41 dispersed
Sed01g0981 Sed-Chr1:7263903 Sed01g0982 Sed-Chr1:7288453 2.90E-63 tandem
Sed01g0981 Sed-Chr1:7263903 Sed05g2881 Sed-Chr5:39841616 9.20E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37175 PF03195 LOB 2.50E-39 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0981 - - - 0.0