Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g0982 | ATGGAGAGCAGCAGCGACGCAAAATGCAGCCCATCTTCAACAATCCTCCGTTCTCAGTCGCCGCCGTCCTCCTCCTTTCCGCCGCCTACGCCGGCAATTCTTCCGTCCGGCGCGGTGGTCAGTCCGTGTGCGGCGTGCAAGATTCTGCGGCGGAGATGCGCAGAGAAATGCGTTTTGGCGCCCTATTTCCCTCCCTCTGATCCTCTCAAGTTCACCATTGCTCATCGAGTCTTCGGCGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTGAATCACAAAGGTCTGATGCAGTGAGTAGTTTGGTGTACGAAGCAAGTGCAAGAATCAGAGATCCAGTTTACGGGTGTGCGGGGGCCATATGCCAGCTCCAGAAACAGATAAACGAACTGCAAGCAGAGCTCGCAAAGACGCATGCGGAGCTTGTCAACATGCAGTGCCACCAAGCTAATTTAGTGGCTTTGATTTGCAAGGAATTGGCTCAAACGCCACCACCAGCGCCGCTGCCGGACTGCCACTCCCTCGACAACAATTTCAACATTGCCACTCCTCAGAGCTATCAAAACTACACATTTGTGTTTGATGATAGCAGTATTTGGACATGA | 606 | 52.48 | MESSSDAKCSPSSTILRSQSPPSSSFPPPTPAILPSGAVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPESQRSDAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTHAELVNMQCHQANLVALICKELAQTPPPAPLPDCHSLDNNFNIATPQSYQNYTFVFDDSSIWT | 201 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 7288453 | 7290320 | + | Sed0011607.1 | Sed01g0982 | 700286 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g0982 | 201 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Sed01g0982 | 201 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Sed01g0982 | 201 | Pfam | Lateral organ boundaries (LOB) domain | 42 | 139 | IPR004883 | - | |
Sed01g0982 | 201 | ProSiteProfiles | LOB domain profile. | 41 | 142 | IPR004883 | - | |
Sed01g0982 | 201 | Coils | Coil | 128 | 148 | - | - | |
Sed01g0982 | 201 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 40 | 158 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0982 | Sed-Chr1:7288453 | Sed05g2881 | Sed-Chr5:39841616 | 4.30E-55 | dispersed | |
Sed01g0981 | Sed-Chr1:7263903 | Sed01g0982 | Sed-Chr1:7288453 | 2.90E-63 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37176 | PF03195 | LOB | 3.90E-41 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g0982 | - | - | - | 0.0 |