Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0982 ATGGAGAGCAGCAGCGACGCAAAATGCAGCCCATCTTCAACAATCCTCCGTTCTCAGTCGCCGCCGTCCTCCTCCTTTCCGCCGCCTACGCCGGCAATTCTTCCGTCCGGCGCGGTGGTCAGTCCGTGTGCGGCGTGCAAGATTCTGCGGCGGAGATGCGCAGAGAAATGCGTTTTGGCGCCCTATTTCCCTCCCTCTGATCCTCTCAAGTTCACCATTGCTCATCGAGTCTTCGGCGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTGAATCACAAAGGTCTGATGCAGTGAGTAGTTTGGTGTACGAAGCAAGTGCAAGAATCAGAGATCCAGTTTACGGGTGTGCGGGGGCCATATGCCAGCTCCAGAAACAGATAAACGAACTGCAAGCAGAGCTCGCAAAGACGCATGCGGAGCTTGTCAACATGCAGTGCCACCAAGCTAATTTAGTGGCTTTGATTTGCAAGGAATTGGCTCAAACGCCACCACCAGCGCCGCTGCCGGACTGCCACTCCCTCGACAACAATTTCAACATTGCCACTCCTCAGAGCTATCAAAACTACACATTTGTGTTTGATGATAGCAGTATTTGGACATGA 606 52.48 MESSSDAKCSPSSTILRSQSPPSSSFPPPTPAILPSGAVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPESQRSDAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTHAELVNMQCHQANLVALICKELAQTPPPAPLPDCHSLDNNFNIATPQSYQNYTFVFDDSSIWT 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7288453 7290320 + Sed0011607.1 Sed01g0982 700286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0982 201 MobiDBLite consensus disorder prediction 1 21 - -
Sed01g0982 201 MobiDBLite consensus disorder prediction 1 28 - -
Sed01g0982 201 Pfam Lateral organ boundaries (LOB) domain 42 139 IPR004883 -
Sed01g0982 201 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Sed01g0982 201 Coils Coil 128 148 - -
Sed01g0982 201 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 40 158 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0982 Sed-Chr1:7288453 Sed05g2881 Sed-Chr5:39841616 4.30E-55 dispersed
Sed01g0981 Sed-Chr1:7263903 Sed01g0982 Sed-Chr1:7288453 2.90E-63 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37176 PF03195 LOB 3.90E-41 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0982 - - - 0.0