Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1017 ATGGGCTGCTTTTGTTGCTCCGGTTCATCGAGCAAGAAATCGGAGGAAATCGAACAAAAAAATCCCAATACGTTTAATTCCAAAACCCACAAGCCCGATCATCCAACTCCCTCAGATAAAGCCAAACTGAATTCAAGTTTGGCAGTGAAGAAGGATTCTGATGTGAAGGTGGTTGTGTCTAAAGATGACCAATTGGCTTTAGATGTAAAAAAATTGAACTTGAAAGATGAGGTTTCTAAGGAAGGAGAAATCAATGGCCGTGACAAGACTTTTACATTCGAAGAACTTGCCGCGGCGACGGGAAATTTCAGGTCAGATTGCTTCTTGGGTGAAGGGGGATTTGGAAAAGTTTACAAGGGATACTTGCAGAAAGTTAATGAGGTTGTAGCGATCAAACAACTTGACCGAAATGGACATCAAGGAATTCGGGAGTTTGTTGTGGAGATCTTGACTTTGAGTCTAGCTGATCACGCTAACCTTGTAAAACTCATTGGCTTTTGTGCTGAAGGGGATCAGAGGCTGTTGGTTTATGAATATATGCCATTAGGATCATTGGAAAATCATTTACATGACCTTCGGCCCGGTTCTAAAGTAATTGATTGGAACACAAGAATGAAAATAGCAGCAGGTGCAGCAAGGGGTTTGGAGTATTTGCACGAGAAGATGAAGCCCCCGGTTATATATCGTGATCTGAAATGCTCAAACATTTTGCTTGGTGAAGGGTATCATCCAAAGTTATCTGATTTTGGATTGGCTAAAGTAGGCCCCATTGGGGATAAAACTCATGTTTCAACCAGGGTTATGGGCACATATGGGTATTGTGCTCCAGATTATGCAATGACGGGCCAGCTAACATTCAAATCAGATATTTACAGCTTTGGCGTCGTCTTGTTGGAACTCATCACTGGCAGGAAAGCAATTGATAATTTAAAACCTCATTCAGAGCAAAATCTTGTGGCTTGGGCACGACCCTTGTTCCGAGACCGGAAGAAGTTCTCACAAATGGTTGATCCAATGCTCCACGGACAATATCCCGTAAGAGGATTATACCAATCTCTAGCCATCGCCGCAATGTGTGTTCAGGAGCAACCGAACATGCGGCCAGTTATATCCGATGTTGTTACGGCTTTAAACTACCTAGCGTCCCACAAATATGATCCTCAAGCTCAACCAAACCGAAGCTCCCAAAAGGGACCATCTTCTCCTAAAACGGAACGGGACGACGAGAAGACGGAAACTTCAGACAACGACGGGTCAGAGAGAGAGTGA 1269 43.66 MGCFCCSGSSSKKSEEIEQKNPNTFNSKTHKPDHPTPSDKAKLNSSLAVKKDSDVKVVVSKDDQLALDVKKLNLKDEVSKEGEINGRDKTFTFEELAAATGNFRSDCFLGEGGFGKVYKGYLQKVNEVVAIKQLDRNGHQGIREFVVEILTLSLADHANLVKLIGFCAEGDQRLLVYEYMPLGSLENHLHDLRPGSKVIDWNTRMKIAAGAARGLEYLHEKMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPIGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDNLKPHSEQNLVAWARPLFRDRKKFSQMVDPMLHGQYPVRGLYQSLAIAAMCVQEQPNMRPVISDVVTALNYLASHKYDPQAQPNRSSQKGPSSPKTERDDEKTETSDNDGSERE 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7562682 7566583 - Sed0016099.1 Sed01g1017 700321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1017 422 MobiDBLite consensus disorder prediction 400 422 - -
Sed01g1017 422 MobiDBLite consensus disorder prediction 385 399 - -
Sed01g1017 422 FunFam Serine/threonine-protein kinase PBS1 180 396 - -
Sed01g1017 422 Gene3D Phosphorylase Kinase; domain 1 88 179 - -
Sed01g1017 422 CDD STKc_IRAK 109 378 - -
Sed01g1017 422 MobiDBLite consensus disorder prediction 384 422 - -
Sed01g1017 422 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524(InterPro)
Sed01g1017 422 ProSiteProfiles Protein kinase domain profile. 103 380 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1017 422 MobiDBLite consensus disorder prediction 1 45 - -
Sed01g1017 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1017 422 FunFam probable serine/threonine-protein kinase RLCKVII 75 179 - -
Sed01g1017 422 Pfam Protein tyrosine and serine/threonine kinase 108 326 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1017 422 SUPERFAMILY Protein kinase-like (PK-like) 89 396 IPR011009 -
Sed01g1017 422 Gene3D Transferase(Phosphotransferase) domain 1 180 399 - -
Sed01g1017 422 SMART serkin_6 103 380 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1017 422 PANTHER OS07G0668900 PROTEIN 47 404 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1017 Sed-Chr1:7562682 Sed07g2413 Sed-Chr7:39992296 7.20E-145 dispersed
Sed01g1017 Sed-Chr1:7562682 Sed01g1018 Sed-Chr1:7562682 2.40E-185 tandem
Sed01g1017 Sed-Chr1:7562682 Sed13g1341 Sed-Chr13:18911607 3.40E-76 wgd
Sed01g1017 Sed-Chr1:7562682 Sed05g2832 Sed-Chr5:39521294 8.50E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78587 PF00069 Pkinase 3.00E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1017 - - - 0.0