Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1021 ATGGAGAACGATTCTTCGGCAGCTATGGAGATCAAGGCCCTTCCCACCCACGACGGAAAGTACCTGCTCTACAACGTCCTCGGCAACTTATTCGAGGTCTCCGCCAAGTACGGCTCTTCCATTCAACCTGTTGGGCGCGGTGCTTACGGCATTGTTTGCTGCACGACGAATTTGGAGACGAAAGATGAGGTGGCGATTAAGAAGATTGGGAATGCTTTTGATAACAGGATTGATGCCAAGAGGACTCTTCGTGAGATTAAACTTCTGTGCCATATGGACCATGAAAATATTATAAAAATCAAAGATATCATTCCTCCACCAGAGAAGGAAAAATTCAATGATGTGTATATTGTGTATGAATTAATGGATACTGACCTTCATCAGATCATTCGCTCTAGCCAGGCTCTAACTGATGATCACTGTCAGTACTTCCTATACCAATTACTTCGAGGTTTGAAGTATTTGCACTCTGCAAATGTCTTGCACCGAGATCTAAAACCAAGCAACCTGCTTCTAAATGCAAATTGTGACCTCAAGATTTGTGACTTTGGGTTAGCAAGAACAACGTCGGAGACAGATTTCATGACCGAATATGTTGTAACTCGATGGTATCGCGCCCCTGAGCTATTACTCAACACTTCTGAATACACTGCAGCGATTGATATTTGGTCTGTTGGATGTATTCTCATGGAAATTCTAAGGAGGGAGCCACTGTTCCCTGGTAAAGATTATGTGCAGCAATTAGGTCTTATAACAGAGTTGCTAGGTTCACCAGATGATTCAGATCTTGGGTTCCTTAGAAGTGATAATGCAAGGAAGTATGTAAAGCAACTTCCTCATTTCCCAAAACAACCGTTAACCGAAAAGTTCCCAGATCTTCCTCCACTGGCTGTTGATCTTGCAGAGAGGATGCTACTCTTTGATCCAAGCAAGAGAATAACTGTCGAGGAGGCAATGAGTCACCCATATGTAATAAGTCTTCATGAAATCAATGAAGAACCAACCTGCCCTTCTCCTTTCAACTTCGATTTTGAGCAGGCATCCTTGGATGAAGAAGATATAAAAGAGCTTATATGGAGAGAGTCTCTCAAGTTCAATCCCAATTACATGTAG 1113 42.59 MENDSSAAMEIKALPTHDGKYLLYNVLGNLFEVSAKYGSSIQPVGRGAYGIVCCTTNLETKDEVAIKKIGNAFDNRIDAKRTLREIKLLCHMDHENIIKIKDIIPPPEKEKFNDVYIVYELMDTDLHQIIRSSQALTDDHCQYFLYQLLRGLKYLHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNTSEYTAAIDIWSVGCILMEILRREPLFPGKDYVQQLGLITELLGSPDDSDLGFLRSDNARKYVKQLPHFPKQPLTEKFPDLPPLAVDLAERMLLFDPSKRITVEEAMSHPYVISLHEINEEPTCPSPFNFDFEQASLDEEDIKELIWRESLKFNPNYM 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7594925 7597672 - Sed0023297.1 Sed01g1021 700325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1021 370 FunFam Mitogen-activated protein kinase 23 132 - -
Sed01g1021 370 Pfam Protein kinase domain 41 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1021 370 SMART serkin_6 38 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1021 370 FunFam Mitogen-activated protein kinase 122 351 - -
Sed01g1021 370 ProSitePatterns MAP kinase signature. 73 176 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1021 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 31 361 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Sed01g1021 370 ProSiteProfiles Protein kinase domain profile. 38 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1021 370 SUPERFAMILY Protein kinase-like (PK-like) 41 330 IPR011009 -
Sed01g1021 370 Gene3D Phosphorylase Kinase; domain 1 21 361 - -
Sed01g1021 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1021 370 ProSitePatterns Protein kinases ATP-binding region signature. 44 68 IPR017441 GO:0005524(InterPro)
Sed01g1021 370 Gene3D Transferase(Phosphotransferase) domain 1 122 351 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1021 Sed-Chr1:7594925 Sed09g0034 Sed-Chr9:288220 1.20E-167 dispersed
Sed01g1021 Sed-Chr1:7594925 Sed01g1022 Sed-Chr1:7594925 3.00E-187 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78589 PF00069 Pkinase 3.50E-69 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1021 K04371 - csv:101218403 712.99