Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1022 ATGCCTGATTTGTTTCCAATTTCCTTGTTGAATGGTTTTGATTATCTGTGTTTGCTCAGCTGCACGACGAATTTGGAGACGAAAGATGAGGTGGCGATTAAGAAGATTGGGAATGCTTTTGATAACAGGATTGATGCCAAGAGGACTCTTCGTGAGATTAAACTTCTGTGCCATATGGACCATGAAAATATTATAAAAATCAAAGATATCATTCCTCCACCAGAGAAGGAAAAATTCAATGATGTGTATATTGTGTATGAATTAATGGATACTGACCTTCATCAGATCATTCGCTCTAGCCAGGCTCTAACTGATGATCACTGTCAGTACTTCCTATACCAATTACTTCGAGGTTTGAAGTATTTGCACTCTGCAAATGTCTTGCACCGAGATCTAAAACCAAGCAACCTGCTTCTAAATGCAAATTGTGACCTCAAGATTTGTGACTTTGGGTTAGCAAGAACAACGTCGGAGACAGATTTCATGACCGAATATGTTGTAACTCGATGGTATCGCGCCCCTGAGCTATTACTCAACACTTCTGAATACACTGCAGCGATTGATATTTGGTCTGTTGGATGTATTCTCATGGAAATTCTAAGGAGGGAGCCACTGTTCCCTGGTAAAGATTATGTGCAGCAATTAGGTCTTATAACAGAGTTGCTAGGTTCACCAGATGATTCAGATCTTGGGTTCCTTAGAAGTGATAATGCAAGGAAGTATGTAAAGCAACTTCCTCATTTCCCAAAACAACCGTTAACCGAAAAGTTCCCAGATCTTCCTCCACTGGCTGTTGATCTTGCAGAGAGGATGCTACTCTTTGATCCAAGCAAGAGAATAACTGTCGAGGAGGCAATGAGTCACCCATATGTAATAAGTCTTCATGAAATCAATGAAGAACCAACCTGCCCTTCTCCTTTCAACTTCGATTTTGAGCAGGCATCCTTGGATGAAGAAGATATAAAAGAGCTTATATGGAGAGAGTCTCTCAAGTTCAATCCCAATTACATGTAG 1014 40.34 MPDLFPISLLNGFDYLCLLSCTTNLETKDEVAIKKIGNAFDNRIDAKRTLREIKLLCHMDHENIIKIKDIIPPPEKEKFNDVYIVYELMDTDLHQIIRSSQALTDDHCQYFLYQLLRGLKYLHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNTSEYTAAIDIWSVGCILMEILRREPLFPGKDYVQQLGLITELLGSPDDSDLGFLRSDNARKYVKQLPHFPKQPLTEKFPDLPPLAVDLAERMLLFDPSKRITVEEAMSHPYVISLHEINEEPTCPSPFNFDFEQASLDEEDIKELIWRESLKFNPNYM 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7594925 7597672 - Sed0023297.2 Sed01g1022 700326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1022 337 Gene3D Transferase(Phosphotransferase) domain 1 89 318 - -
Sed01g1022 337 SMART serkin_6 13 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1022 337 FunFam Mitogen-activated protein kinase 12 99 - -
Sed01g1022 337 FunFam Mitogen-activated protein kinase 89 318 - -
Sed01g1022 337 Gene3D Phosphorylase Kinase; domain 1 19 328 - -
Sed01g1022 337 ProSiteProfiles Protein kinase domain profile. 1 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1022 337 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1022 337 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 21 328 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Sed01g1022 337 Pfam Protein kinase domain 23 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1022 337 SUPERFAMILY Protein kinase-like (PK-like) 23 297 IPR011009 -
Sed01g1022 337 ProSitePatterns MAP kinase signature. 40 143 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1022 Sed-Chr1:7594925 Sed01g1024 Sed-Chr1:7594925 1.70E-160 dispersed
Sed01g1021 Sed-Chr1:7594925 Sed01g1022 Sed-Chr1:7594925 3.00E-187 tandem
Sed01g1022 Sed-Chr1:7594925 Sed01g1023 Sed-Chr1:7594925 2.50E-116 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78590 PF00069 Pkinase 7.80E-65 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1022 K04371 - csv:101218403 626.32