Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1023 ATGGAGAACGATTCTTCGGCAGCTATGGAGATCAAGGCCCTTCCCACCCACGACGGAAAGTACCTGCTCTACAACGTCCTCGGCAACTTATTCGAGGTCTCCGCCAAGTACGGCTCTTCCATTCAACCTGTTGGGCGCGGTGCTTACGGCATTGTTTGCTGCACGACGAATTTGGAGACGAAAGATGAGGTGGCGATTAAGAAGATTGGGAATGCTTTTGATAACAGGATTGATGCCAAGAGGACTCTTCGTGAGATTAAACTTCTGTGCCATATGGACCATGAAAATATTATAAAAATCAAAGATATCATTCCTCCACCAGAGAAGGAAAAATTCAATGATGTGTATATTGTGTATGAATTAATGGATACTGACCTTCATCAGATCATTCGCTCTAGCCAGGCTCTAACTGATGATCACTGTCAGTACTTCCTATACCAATTACTTCGAGGTTTGAAGTATTTGCACTCTGCAAATGTCTTGCACCGAGATCTAAAACCAAGCAACCTGCTTCTAAATGCAAATTGTGACCTCAAGATTTGTGACTTTGGGTTAGCAAGAACAACGTCGGAGACAGATTTCATGACCGAATATGTTGTAACTCGATGGTATCGCGCCCCTGAGCTATTACTCAACACTTCTGAATACACTGCAGCGATTGATATTTGGTCTGTTGGATGTATTCTCATGGAAATTCTAAGGAGGGAGCCACTGTTCCCTGGTAAAGATTATGTGCAGCAATTAGGTCTTATAACAGAGGTACTTAATCATTGTCTTCTAATTTTATGCCTGACACTGAGGTGA 804 42.79 MENDSSAAMEIKALPTHDGKYLLYNVLGNLFEVSAKYGSSIQPVGRGAYGIVCCTTNLETKDEVAIKKIGNAFDNRIDAKRTLREIKLLCHMDHENIIKIKDIIPPPEKEKFNDVYIVYELMDTDLHQIIRSSQALTDDHCQYFLYQLLRGLKYLHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNTSEYTAAIDIWSVGCILMEILRREPLFPGKDYVQQLGLITEVLNHCLLILCLTLR 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7594925 7597672 - Sed0023297.3 Sed01g1023 700327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1023 267 Gene3D Phosphorylase Kinase; domain 1 21 121 - -
Sed01g1023 267 SMART serkin_6 38 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1023 267 FunFam Mitogen-activated protein kinase 122 260 - -
Sed01g1023 267 FunFam Mitogen-activated protein kinase 23 132 - -
Sed01g1023 267 Pfam Protein kinase domain 41 246 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1023 267 ProSitePatterns MAP kinase signature. 73 176 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1023 267 SUPERFAMILY Protein kinase-like (PK-like) 41 256 IPR011009 -
Sed01g1023 267 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1023 267 Gene3D Transferase(Phosphotransferase) domain 1 122 255 - -
Sed01g1023 267 ProSiteProfiles Protein kinase domain profile. 38 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1023 267 ProSitePatterns Protein kinases ATP-binding region signature. 44 68 IPR017441 GO:0005524(InterPro)
Sed01g1023 267 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 31 256 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1023 Sed-Chr1:7594925 Sed01g3856 Sed-Chr1:67813320 4.30E-119 dispersed
Sed01g1022 Sed-Chr1:7594925 Sed01g1023 Sed-Chr1:7594925 2.50E-116 tandem
Sed01g1023 Sed-Chr1:7594925 Sed01g1024 Sed-Chr1:7594925 4.20E-90 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78591 PF00069 Pkinase 1.50E-62 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1023 K04371 - csv:101218403 481.87