Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1024 ATGATTGTCTCTTTTTTCTCTTTTCAGATTATAAAAATCAAAGATATCATTCCTCCACCAGAGAAGGAAAAATTCAATGATGTGTATATTGTGTATGAATTAATGGATACTGACCTTCATCAGATCATTCGCTCTAGCCAGGCTCTAACTGATGATCACTGTCAGTACTTCCTATACCAATTACTTCGAGGTTTGAAGTATTTGCACTCTGCAAATGTCTTGCACCGAGATCTAAAACCAAGCAACCTGCTTCTAAATGCAAATTGTGACCTCAAGATTTGTGACTTTGGGTTAGCAAGAACAACGTCGGAGACAGATTTCATGACCGAATATGTTGTAACTCGATGGTATCGCGCCCCTGAGCTATTACTCAACACTTCTGAATACACTGCAGCGATTGATATTTGGTCTGTTGGATGTATTCTCATGGAAATTCTAAGGAGGGAGCCACTGTTCCCTGGTAAAGATTATGTGCAGCAATTAGGTCTTATAACAGAGTTGCTAGGTTCACCAGATGATTCAGATCTTGGGTTCCTTAGAAGTGATAATGCAAGGAAGTATGTAAAGCAACTTCCTCATTTCCCAAAACAACCGTTAACCGAAAAGTTCCCAGATCTTCCTCCACTGGCTGTTGATCTTGCAGAGAGGATGCTACTCTTTGATCCAAGCAAGAGAATAACTGTCGAGGAGGCAATGAGTCACCCATATGTAATAAGTCTTCATGAAATCAATGAAGAACCAACCTGCCCTTCTCCTTTCAACTTCGATTTTGAGCAGGCATCCTTGGATGAAGAAGATATAAAAGAGCTTATATGGAGAGAGTCTCTCAAGTTCAATCCCAATTACATGTAG 852 40.02 MIVSFFSFQIIKIKDIIPPPEKEKFNDVYIVYELMDTDLHQIIRSSQALTDDHCQYFLYQLLRGLKYLHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNTSEYTAAIDIWSVGCILMEILRREPLFPGKDYVQQLGLITELLGSPDDSDLGFLRSDNARKYVKQLPHFPKQPLTEKFPDLPPLAVDLAERMLLFDPSKRITVEEAMSHPYVISLHEINEEPTCPSPFNFDFEQASLDEEDIKELIWRESLKFNPNYM 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7594925 7597672 - Sed0023297.4 Sed01g1024 700328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1024 283 SMART serkin_6 6 237 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1024 283 Pfam Protein kinase domain 10 237 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1024 283 SUPERFAMILY Protein kinase-like (PK-like) 10 243 IPR011009 -
Sed01g1024 283 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 274 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Sed01g1024 283 Gene3D Phosphorylase Kinase; domain 1 9 280 - -
Sed01g1024 283 FunFam Mitogen-activated protein kinase 35 264 - -
Sed01g1024 283 ProSitePatterns Serine/Threonine protein kinases active-site signature. 73 85 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1024 283 ProSiteProfiles Protein kinase domain profile. 1 237 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1024 283 Gene3D Transferase(Phosphotransferase) domain 1 37 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1022 Sed-Chr1:7594925 Sed01g1024 Sed-Chr1:7594925 1.70E-160 dispersed
Sed01g1024 Sed-Chr1:7594925 Sed05g0755 Sed-Chr5:5911782 3.50E-127 dispersed
Sed01g1024 Sed-Chr1:7594925 Sed01g1028 Sed-Chr1:7683462 7.50E-114 proximal
Sed01g1023 Sed-Chr1:7594925 Sed01g1024 Sed-Chr1:7594925 4.20E-90 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78592 PF00069 Pkinase 2.60E-54 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1024 K04371 - csv:101218403 545.043