Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1028 ATGGCGGATGTGGGTCAGAACAACGCCGCTGACTTTCCGGCAGTTCCTACCCATGGCGGTCAATTCGTACAGTACAATATCTTCGGGAATCCGTTTGAAATCACCGCCAAATATCGTCCGCCGATTATGCCGATCGGTCGCGGCGCCTACGGCGTCGTTTGTTCGGTTATGAATTCTGAGACGAACGAGATGGTTGCGGTTAAGAAGATTGCCAACGCGTTTGATAATCATATGGATGCGAAGCGGACGCTCCGTGAGATTAAGCTTCTCCGCCATTTGGATCATGAAAATGTAGTAGCCATAAGAGATGTGATTCCTCCACCTTTAAGGAGAGAGTTCAATGATGTCTACATTTCCACCGAACTCATGGATACCGATCTTCACCAAATAATCCGCTCCAACCAAAGTTTGTCGGAAGAACATTGTCAGTATTTCCTTTATCAGATTCTCCGAGGACTGAAATACATACATTCTGCCAATGTCATTCATCGGGACTTGAAACCGAGCAATCTTTTGCTTAATGCCAACTGTGATCTTAAAATTTGCGACTTTGGGCTTGCTCGTCCAACTTCGGAAAATGAATCCATGACAGAATATGTTGTTACAAGATGGTACAGGGCACCTGAGCTACTATTGAACTCTGATTATACAGCTGCTATAGATATATGGTCTGTTGGTTGCATCTTTCTGGAGCTTATGAATAGAAGGCCTTTATTTCCAGGCAGAGATCATGTGCATCAGATGCGTTTATTGACTGAGCTTCTTGGCACACCAACCGAAGCGGATCTTGGTTTTGTTCGAAATGAAGACTCGAGAAGATATCTTAGGCAGCTACCTCCACATCCTCGTCAGCCATTAGCAACCGTTTTCCCTCATGTTCATCCACTGGCAATTGATCTTGTGGATAGAATGTTGACGTTTGACCCAACCAATAGAATTACTGTTGAAGAAGCATTGGCACATCCATACCTAGAAAGATTGCACGACATAGCCGATGAGCCAGTTTGCCCGGAGCCATTCTCGTTCGAGTTTGAGCAACAATTCATGGATGAAGAGCAGATGAAGGAGATGATTTACAGAGAGGCATTGGCACTCAATCCGGAATTTGCGTGA 1113 45.01 MADVGQNNAADFPAVPTHGGQFVQYNIFGNPFEITAKYRPPIMPIGRGAYGVVCSVMNSETNEMVAVKKIANAFDNHMDAKRTLREIKLLRHLDHENVVAIRDVIPPPLRREFNDVYISTELMDTDLHQIIRSNQSLSEEHCQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPTSENESMTEYVVTRWYRAPELLLNSDYTAAIDIWSVGCIFLELMNRRPLFPGRDHVHQMRLLTELLGTPTEADLGFVRNEDSRRYLRQLPPHPRQPLATVFPHVHPLAIDLVDRMLTFDPTNRITVEEALAHPYLERLHDIADEPVCPEPFSFEFEQQFMDEEQMKEMIYREALALNPEFA 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7683462 7687843 + Sed0002265.1 Sed01g1028 700332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1028 370 ProSitePatterns MAP kinase signature. 74 177 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1028 370 SUPERFAMILY Protein kinase-like (PK-like) 44 331 IPR011009 -
Sed01g1028 370 SMART serkin_6 39 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1028 370 Gene3D Transferase(Phosphotransferase) domain 1 123 351 - -
Sed01g1028 370 Gene3D Phosphorylase Kinase; domain 1 22 361 - -
Sed01g1028 370 CDD STKc_TEY_MAPK 32 367 - -
Sed01g1028 370 FunFam Mitogen-activated protein kinase 24 133 - -
Sed01g1028 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 32 362 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Sed01g1028 370 ProSitePatterns Protein kinases ATP-binding region signature. 45 69 IPR017441 GO:0005524(InterPro)
Sed01g1028 370 FunFam Mitogen-activated protein kinase 123 351 - -
Sed01g1028 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1028 370 ProSiteProfiles Protein kinase domain profile. 39 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1028 370 Pfam Protein kinase domain 44 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1028 Sed-Chr1:7683462 Sed04g0107 Sed-Chr4:649301 3.20E-173 dispersed
Sed01g1024 Sed-Chr1:7594925 Sed01g1028 Sed-Chr1:7683462 7.50E-114 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78593 PF00069 Pkinase 7.40E-75 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1028 K20536 - csv:101202796 705.286