Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed01g1059 | ATGGGTAGAGGCGGCGAAAACGATGGGAAAAAGGAAATTTTTGCTGACAACTCCGTGAATAAAGAAGCGTACCCTGCTTGGGCTAAGGATGTTGGAGAATGTCTAGAGAAGTACCAAGTGAATCCTGATCTGGGATTATCTTCTGAAGAGGTTGAGAAACAGAGGAAGATCTATGGTTTCAATGAATTGGAGAAGCATGAAGGTACTTCGATTTGGAAACTGGTTTTGGAACAATTTAATGACACATTAGTTAGGATTCTATTAGCTGCAGCAGTTGTATCTTTTGTTCTTGCGTGGTATGATGGCGATGAAGGAGGTGAGATGAAGATTACAGCATTTGTGGAGCCTCTAGTAATTTTCTTGATATTGATTGTGAATGCCATTGTTGGTGTTTGGCAAGAGAACAATGCTGAGAAAGCATTGGAAGCCCTTAAAGAAATTCAGTCTGAACAAGCTACAGTGATACGAAATGGTAAACGAGTTTCAATTGTTGCCAAAGACCTTGTGCCTGGTGATATAGTGGAACTCAGAGTTGGGGATAAGGTACCTGCTGACATGCGAGTATTGCGTTTAATCAGCTCAACTTTTCGAATTGAGCAAGGGTCCTTGACAGGCGAGAGTGAAGCAGTGAGCAAAACTGCTAAGGCTGTGCCAGAAGATACAGATATTCAAGGGAAAAAGTGTATGGCTTTTGCAGGGACAACAGTTGTCAATGGAAATTGTATTTGCATTGTTACCCATACAGGTATGAGCACTGAACTGGGACAGGTGCATTCTCAGATACAAGAAGCATCCCAGAACGAAGATGACACGCCCTTGAAGAAAAAGTTGAATGAGTTTGGAGAGCTCTTAACAGCAATAATTGGAGTGATATGTGCTCTAGTCTGGCTTATTAATGTTAAATACTTCCTCACTTGGGAATATGTTGATGGGTGGCCTGCAAATTTCAAATTCTCATTTGAGAAATGTACTTATTACTTTGAGATTGCCGTGGCATTGGCTGTAGCTGCAATTCCTGAAGGTTTGCCTGCAGTCATAACTACATGCTTAGCACTTGGCACCCGGAAGATGGCCCAAAAGAATGCGCTTGTACGGAAGCTGCCCAGTGTTGAAACTCTTGGCTGTACAACTGTTATATGTTCTGATAAGACAGGTACTTTAACAACTAATCAGATGGCTGTAGCAAAAGTTGTGGCTCTTGGTTCTCGTGTTGGTACACTACGAGCCTTTGATGTGGAAGGAACTACATACGATCCTTTCGATGGAAAAATAATTGGTTGGCTTGGAGGCCAACTGGATGCCAATTTGCAAATGTTGGCAAAGATTGCTGCTGTCTGTAATGATGCAGGTGTTGAAAAATCTGGCCAACATTTTGTTGCAAATGGGATGCCTACCGAAGCAGCATTAAAGGTTCTTGTGGAAAAGATGGGGCTTCCTGAAGGATATGACTCAAGTTCAGCTTCTGTTAATGGGGATGTCCTCCGATGCTGCCAAGTTTGGAATAAGAACGAGCAACGCATTGCTACTCTAGAGTTTGACCGAGACCGTAAATCCATGGGAGTTATTACAAATTCCTGCTCTGGGAAGAAGTCATTACTTGTGAAGGGTGCGGTCGAAAATCTTTTGGAACGGAGTTCATTTATTCAACTGCTCGATGGATCTATTGTGGAGTTGGACTCAGACTCAAAAACACACCTCTTAGGTTTCTTGCGTGAGATGTCATCAAGTGCATTAAGGTGTTTAGGTTTTGCATACAAGGAAGATCTTCCAGAATTTTCTACTTATAACAATGGTGACGAAGACCATCCAGCCCATCAGCTTTTACTTGACCCGTCCAAATACTCTACAATTGAAAGTAATCTTATTTTTGCTGGCTTTGTTGGGTTAAGGGATCCTCCTCGAAAAGTAGTCCATCAAGCAATTGAAGACTGTAAAGCTGCTGGTATTCGTGTCATGGTTATCACAGGGGACAATCAGAACACAGCTGAAGCTGTTTGTCGAGAAATAGGTGTATTTGGACAACATGAAGCTCTAAGTTCCAGAAGTTTAACAGGAAAAGAATTCATGGCAATGAGCCGGAAGGATCAAAAATCTTATTTAAGACAAGATGGAGGACTTCTTTTCTCAAGGGCTGAACCAAGGCATAAGCAAGAGATAGTAAGATTGCTTAAGGAAGATGGTGAGGTTGTTGCAATGACAGGAGATGGAGTCAATGATGCACCTGCTTTAAAGTTGGCTGATATTGGGATTGCAATGGGAATTGCTGGGACAGAGGTTGCAAAGGAAGCCTCCGACATGGTTCTTGCAGATGACAATTTTAGTACAATAGTTGCAGCAGTTGGTGAAGGCCGATCCATTTACGACAATATGAAGGCTTTTATCAGGTACATGATTTCCTCAAATATTGGCGAGGTTGCGTCAATATTTTTGACAGCAGCACTGGGTATTCCCGAAGGGATGATCCCTGTTCAGCTGCTCTGGGTTAATCTTGTTACAGATGGACCTCCAGCAACTGCATTGGGATTTAATCCACCTGACAATGATATCATGAAGAAACCGCCAAGAAAAAGTGACGACTCGTTGATCACGGCCTGGATTTTGTTCCGCTATTTGGTGATTGGACTTTACGTAGGGATAGCAACTGTAGGAGTATTTATCATTTGGTATACTCATGCTTCATTCTTGGGCATCGACCTGTCCGGAGATGGTCACAGTCTGGTCTCTTACTCTCAGCTTGCCAACTGGGGTCAGTGCTCGTCTTGGGAAGGGTTTTCCGTGTCGCCCTTCACGGCTGGGGATCGAGTCTTCAACTTTGATTCAAATCCATGCGAGTACTTCCGCTCGGGCAAGATCAAGGCCTCGACTCTCTCACTCTCTGTTTTGGTCGCCATTGAGATGTTCAATTCCCTCAATGCCCTCTCTGAGGATGGAAGCCTGCTGACTATGCCCCCTTGGGTTAACCCGTGGCTCCTCTTTGCCATGTCTGTTTCATTTGGCTTGCATTTCTTGATCCTGTACGTGCCATTCCTCGCCCAAATTTTCGGCATCGTCCCTCTCTCCTTGAATGAATGGCTCTTGGTTCTGGCCGTGGCATTGCCCGTGATCATAATCGATGAGATTCTAAAATTCGTGGGAAGGCTCACAAGTGGGCTGAGGACATCTCACCAGAGTAGATCATCGAAGCTGAAATCGGAGTAG | 3198 | 43.84 | MGRGGENDGKKEIFADNSVNKEAYPAWAKDVGECLEKYQVNPDLGLSSEEVEKQRKIYGFNELEKHEGTSIWKLVLEQFNDTLVRILLAAAVVSFVLAWYDGDEGGEMKITAFVEPLVIFLILIVNAIVGVWQENNAEKALEALKEIQSEQATVIRNGKRVSIVAKDLVPGDIVELRVGDKVPADMRVLRLISSTFRIEQGSLTGESEAVSKTAKAVPEDTDIQGKKCMAFAGTTVVNGNCICIVTHTGMSTELGQVHSQIQEASQNEDDTPLKKKLNEFGELLTAIIGVICALVWLINVKYFLTWEYVDGWPANFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVAKVVALGSRVGTLRAFDVEGTTYDPFDGKIIGWLGGQLDANLQMLAKIAAVCNDAGVEKSGQHFVANGMPTEAALKVLVEKMGLPEGYDSSSASVNGDVLRCCQVWNKNEQRIATLEFDRDRKSMGVITNSCSGKKSLLVKGAVENLLERSSFIQLLDGSIVELDSDSKTHLLGFLREMSSSALRCLGFAYKEDLPEFSTYNNGDEDHPAHQLLLDPSKYSTIESNLIFAGFVGLRDPPRKVVHQAIEDCKAAGIRVMVITGDNQNTAEAVCREIGVFGQHEALSSRSLTGKEFMAMSRKDQKSYLRQDGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYDNMKAFIRYMISSNIGEVASIFLTAALGIPEGMIPVQLLWVNLVTDGPPATALGFNPPDNDIMKKPPRKSDDSLITAWILFRYLVIGLYVGIATVGVFIIWYTHASFLGIDLSGDGHSLVSYSQLANWGQCSSWEGFSVSPFTAGDRVFNFDSNPCEYFRSGKIKASTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLFAMSVSFGLHFLILYVPFLAQIFGIVPLSLNEWLLVLAVALPVIIIDEILKFVGRLTSGLRTSHQSRSSKLKSE | 1065 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 7912554 | 7918345 | - | Sed0005475.1 | Sed01g1059 | 700363 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed01g1059 | 1065 | Gene3D | - | 45 | 262 | - | - | |
| Sed01g1059 | 1065 | SFLD | p-type atpase | 361 | 785 | IPR044492 | - | |
| Sed01g1059 | 1065 | Gene3D | - | 390 | 632 | IPR023299 | GO:0000166(InterPro) | |
| Sed01g1059 | 1065 | Pfam | Cation transporting ATPase, C-terminus | 819 | 1044 | IPR006068 | - | |
| Sed01g1059 | 1065 | Pfam | Cation transporter/ATPase, N-terminus | 27 | 94 | IPR004014 | - | |
| Sed01g1059 | 1065 | FunFam | calcium-transporting ATPase, endoplasmic reticulum-type | 390 | 632 | - | - | |
| Sed01g1059 | 1065 | SUPERFAMILY | HAD-like | 378 | 837 | IPR036412 | - | |
| Sed01g1059 | 1065 | SFLD | C1.7: P-type atpase like | 361 | 785 | - | - | |
| Sed01g1059 | 1065 | NCBIfam | HAD-IC family P-type ATPase | 319 | 401 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed01g1059 | 1065 | NCBIfam | HAD-IC family P-type ATPase | 707 | 817 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed01g1059 | 1065 | NCBIfam | HAD-IC family P-type ATPase | 118 | 307 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed01g1059 | 1065 | PRINTS | P-type cation-transporting ATPase superfamily signature | 199 | 213 | - | - | |
| Sed01g1059 | 1065 | PRINTS | P-type cation-transporting ATPase superfamily signature | 380 | 394 | - | - | |
| Sed01g1059 | 1065 | PRINTS | P-type cation-transporting ATPase superfamily signature | 733 | 752 | - | - | |
| Sed01g1059 | 1065 | PRINTS | P-type cation-transporting ATPase superfamily signature | 647 | 657 | - | - | |
| Sed01g1059 | 1065 | PRINTS | P-type cation-transporting ATPase superfamily signature | 757 | 769 | - | - | |
| Sed01g1059 | 1065 | PRINTS | P-type cation-transporting ATPase superfamily signature | 625 | 636 | - | - | |
| Sed01g1059 | 1065 | SMART | Cation_ATPase_N_a_2 | 25 | 99 | IPR004014 | - | |
| Sed01g1059 | 1065 | Pfam | haloacid dehalogenase-like hydrolase | 625 | 747 | - | - | |
| Sed01g1059 | 1065 | Gene3D | - | 377 | 778 | IPR023214 | - | |
| Sed01g1059 | 1065 | Pfam | Cation transport ATPase (P-type) | 444 | 548 | - | - | |
| Sed01g1059 | 1065 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 25 | 1046 | IPR023298 | - | |
| Sed01g1059 | 1065 | Pfam | E1-E2 ATPase | 147 | 360 | - | - | |
| Sed01g1059 | 1065 | FunFam | Calcium-transporting P-type ATPase, putative | 626 | 778 | - | - | |
| Sed01g1059 | 1065 | Gene3D | - | 77 | 1046 | - | - | |
| Sed01g1059 | 1065 | FunFam | Calcium-transporting ATPase, putative | 128 | 262 | - | - | |
| Sed01g1059 | 1065 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 387 | 629 | IPR023299 | GO:0000166(InterPro) | |
| Sed01g1059 | 1065 | FunFam | Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 | 251 | 409 | - | - | |
| Sed01g1059 | 1065 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 382 | 388 | IPR018303 | - | |
| Sed01g1059 | 1065 | FunFam | ECA1 (ER-TYPE CA2+-ATPASE 1) | 797 | 1051 | - | - | |
| Sed01g1059 | 1065 | SUPERFAMILY | Calcium ATPase, transduction domain A | 149 | 259 | IPR008250 | - | |
| Sed01g1059 | 1065 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 28 | 1049 | - | GO:0005388(PANTHER)|GO:0006874(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0070588(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g1059 | Sed-Chr1:7912554 | Sed11g0591 | Sed-Chr11:6913248 | 1.00E-99 | dispersed | |
| Sed01g1059 | Sed-Chr1:7912554 | Sed01g1060 | Sed-Chr1:7912554 | 0.00E+00 | tandem | |
| Sed10g1165 | Sed-Chr10:18623604 | Sed01g1059 | Sed-Chr1:7912554 | 3.00E-226 | transposed | |
| Sed01g1059 | Sed-Chr1:7912554 | Sed13g1363 | Sed-Chr13:19121131 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed01g1059 | K01537 | - | csv:101206729 | 1951.79 |