Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1060 ATGGGTAGAGGCGGCGAAAACGATGGGAAAAAGGAAATTTTTGCTGACAACTCCGTGAATAAAGAAGCGTACCCTGCTTGGGCTAAGGATGTTGGAGAATGTCTAGAGAAGTACCAAGTGAATCCTGATCTGGGATTATCTTCTGAAGAGGTTGAGAAACAGAGGAAGATCTATGGTTTCAATGAATTGGAGAAGCATGAAGGTACTTCGATTTGGAAACTGGTTTTGGAACAATTTAATGACACATTAGTTAGGATTCTATTAGCTGCAGCAGTTGTATCTTTTGTTCTTGCGTGGTATGATGGCGATGAAGGAGGTGAGATGAAGATTACAGCATTTGTGGAGCCTCTAGTAATTTTCTTGATATTGATTGTGAATGCCATTGTTGGTGTTTGGCAAGAGAACAATGCTGAGAAAGCATTGGAAGCCCTTAAAGAAATTCAGTCTGAACAAGCTACAGTGATACGAAATGGTAAACGAGTTTCAATTGTTGCCAAAGACCTTGTGCCTGGTGATATAGTGGAACTCAGAGTTGGGGATAAGGTACCTGCTGACATGCGAGTATTGCGTTTAATCAGCTCAACTTTTCGAATTGAGCAAGGGTCCTTGACAGGCGAGAGTGAAGCAGTGAGCAAAACTGCTAAGGCTGTGCCAGAAGATACAGATATTCAAGGGAAAAAGTGTATGGCTTTTGCAGGGACAACAGTTGTCAATGGAAATTGTATTTGCATTGTTACCCATACAGGTATGAGCACTGAACTGGGACAGGTGCATTCTCAGATACAAGAAGCATCCCAGAACGAAGATGACACGCCCTTGAAGAAAAAGTTGAATGAGTTTGGAGAGCTCTTAACAGCAATAATTGGAGTGATATGTGCTCTAGTCTGGCTTATTAATGTTAAATACTTCCTCACTTGGGAATATGTTGATGGGTGGCCTGCAAATTTCAAATTCTCATTTGAGAAATGTACTTATTACTTTGAGATTGCCGTGGCATTGGCTGTAGCTGCAATTCCTGAAGGTTTGCCTGCAGTCATAACTACATGCTTAGCACTTGGCACCCGGAAGATGGCCCAAAAGAATGCGCTTGTACGGAAGCTGCCCAGTGTTGAAACTCTTGGCTGTACAACTGTTATATGTTCTGATAAGACAGGTACTTTAACAACTAATCAGATGGCTGTAGCAAAAGTTGTGGCTCTTGGTTCTCGTGTTGGTACACTACGAGCCTTTGATGTGGAAGGAACTACATACGATCCTTTCGATGGAAAAATAATTGGTTGGCTTGGAGGCCAACTGGATGCCAATTTGCAAATGTTGGCAAAGATTGCTGCTGTCTGTAATGATGCAGGTGTTGAAAAATCTGGCCAACATTTTGTTGCAAATGGGATGCCTACCGAAGCAGCATTAAAGGTTCTTGTGGAAAAGATGGGGCTTCCTGAAGGATATGACTCAAGTTCAGCTTCTGTTAATGGGGATGTCCTCCGATGCTGCCAAGTTTGGAATAAGAACGAGCAACGCATTGCTACTCTAGAGTTTGACCGAGACCGTAAATCCATGGGAGTTATTACAAATTCCTGCTCTGGGAAGAAGTCATTACTTGTGAAGGGTGCGGTCGAAAATCTTTTGGAACGGAGTTCATTTATTCAACTGCTCGATGGATCTATTGTGGAGTTGGACTCAGACTCAAAAACACACCTCTTAGGTTTCTTGCGTGAGATGTCATCAAGTGCATTAAGGTGTTTAGGTTTTGCATACAAGGAAGATCTTCCAGAATTTTCTACTTATAACAATGGTGACGAAGACCATCCAGCCCATCAGCTTTTACTTGACCCGTCCAAATACTCTACAATTGAAAGTAATCTTATTTTTGCTGGCTTTGTTGGGTTAAGGGATCCTCCTCGAAAAGTAGTCCATCAAGCAATTGAAGACTGTAAAGCTGCTGGTATTCGTGTCATGGTTATCACAGGGGACAATCAGAACACAGCTGAAGCTGTTTGTCGAGAAATAGGTGTATTTGGACAACATGAAGCTCTAAGTTCCAGAAGTTTAACAGGAAAAGAATTCATGGCAATGAGCCGGAAGGATCAAAAATCTTATTTAAGACAAGATGGAGGACTTCTTTTCTCAAGGGCTGAACCAAGGCATAAGCAAGAGATAGTAAGATTGCTTAAGGAAGATGGTGAGGTTGTTGCAATGACAGGAGATGGAGTCAATGATGCACCTGCTTTAAAGTTGGCTGATATTGGGATTGCAATGGGAATTGCTGGGACAGAGGTTGCAAAGGAAGCCTCCGACATGGTTCTTGCAGATGACAATTTTAGTACAATAGTTGCAGCAGTTGGTGAAGGCCGATCCATTTACGACAATATGAAGGCTTTTATCAGGTTTTCTTCCACTTGA 2400 42.17 MGRGGENDGKKEIFADNSVNKEAYPAWAKDVGECLEKYQVNPDLGLSSEEVEKQRKIYGFNELEKHEGTSIWKLVLEQFNDTLVRILLAAAVVSFVLAWYDGDEGGEMKITAFVEPLVIFLILIVNAIVGVWQENNAEKALEALKEIQSEQATVIRNGKRVSIVAKDLVPGDIVELRVGDKVPADMRVLRLISSTFRIEQGSLTGESEAVSKTAKAVPEDTDIQGKKCMAFAGTTVVNGNCICIVTHTGMSTELGQVHSQIQEASQNEDDTPLKKKLNEFGELLTAIIGVICALVWLINVKYFLTWEYVDGWPANFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVAKVVALGSRVGTLRAFDVEGTTYDPFDGKIIGWLGGQLDANLQMLAKIAAVCNDAGVEKSGQHFVANGMPTEAALKVLVEKMGLPEGYDSSSASVNGDVLRCCQVWNKNEQRIATLEFDRDRKSMGVITNSCSGKKSLLVKGAVENLLERSSFIQLLDGSIVELDSDSKTHLLGFLREMSSSALRCLGFAYKEDLPEFSTYNNGDEDHPAHQLLLDPSKYSTIESNLIFAGFVGLRDPPRKVVHQAIEDCKAAGIRVMVITGDNQNTAEAVCREIGVFGQHEALSSRSLTGKEFMAMSRKDQKSYLRQDGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYDNMKAFIRFSST 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7912554 7918345 - Sed0005475.2 Sed01g1060 700364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1060 799 SUPERFAMILY HAD-like 378 796 IPR036412 -
Sed01g1060 799 Pfam E1-E2 ATPase 147 360 - -
Sed01g1060 799 Gene3D - 45 262 - -
Sed01g1060 799 PANTHER CALCIUM-TRANSPORTING ATPASE 28 797 - GO:0005388(PANTHER)|GO:0006874(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0070588(PANTHER)
Sed01g1060 799 Gene3D - 77 796 - -
Sed01g1060 799 FunFam Calcium-transporting P-type ATPase, putative 626 778 - -
Sed01g1060 799 Gene3D - 390 632 IPR023299 GO:0000166(InterPro)
Sed01g1060 799 SUPERFAMILY Calcium ATPase, transmembrane domain M 25 797 IPR023298 -
Sed01g1060 799 Gene3D - 377 778 IPR023214 -
Sed01g1060 799 Pfam Cation transport ATPase (P-type) 444 548 - -
Sed01g1060 799 Pfam Cation transporter/ATPase, N-terminus 27 94 IPR004014 -
Sed01g1060 799 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 250 409 - -
Sed01g1060 799 NCBIfam HAD-IC family P-type ATPase 707 797 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed01g1060 799 NCBIfam HAD-IC family P-type ATPase 319 401 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed01g1060 799 NCBIfam HAD-IC family P-type ATPase 118 307 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed01g1060 799 SUPERFAMILY Calcium ATPase, transduction domain A 149 259 IPR008250 -
Sed01g1060 799 PRINTS P-type cation-transporting ATPase superfamily signature 733 752 - -
Sed01g1060 799 PRINTS P-type cation-transporting ATPase superfamily signature 625 636 - -
Sed01g1060 799 PRINTS P-type cation-transporting ATPase superfamily signature 647 657 - -
Sed01g1060 799 PRINTS P-type cation-transporting ATPase superfamily signature 380 394 - -
Sed01g1060 799 PRINTS P-type cation-transporting ATPase superfamily signature 757 769 - -
Sed01g1060 799 PRINTS P-type cation-transporting ATPase superfamily signature 199 213 - -
Sed01g1060 799 FunFam calcium-transporting ATPase, endoplasmic reticulum-type 390 632 - -
Sed01g1060 799 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 387 629 IPR023299 GO:0000166(InterPro)
Sed01g1060 799 FunFam Calcium-transporting ATPase, putative 128 262 - -
Sed01g1060 799 SFLD Haloacid Dehalogenase 361 785 - -
Sed01g1060 799 SMART Cation_ATPase_N_a_2 25 99 IPR004014 -
Sed01g1060 799 SFLD p-type atpase 361 785 IPR044492 -
Sed01g1060 799 ProSitePatterns E1-E2 ATPases phosphorylation site. 382 388 IPR018303 -
Sed01g1060 799 Pfam haloacid dehalogenase-like hydrolase 624 747 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1060 Sed-Chr1:7912554 Sed13g1363 Sed-Chr13:19121131 0.00E+00 dispersed
Sed01g1059 Sed-Chr1:7912554 Sed01g1060 Sed-Chr1:7912554 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1060 K01537 - csv:101206729 1449.11