Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1068 ATGGCTAGGGTTTTGGTTCAATCCACAAATCTTCCCGGTTTGGTCGCTGGAAGAAAGAGCACCCCGTCAAGAGGATCCGGAAATGGAAAACGGGCTGTTAAAATGATGTCGAGTGTTCATGCGCCTGGTTCGGCGATTAGAAGCTTCTCTGGACTTCGGGGGCATAATTCTCTGGATAACATGTTGAGAACTGGGCAAGATTTTCATTCGAAGATGGCCTTGGCGATCTCTTCGAGAAAAGGAAAGGCGAGCCGATGTGTTGCGAAAGCCATGTTTGAGCGGTTCACTGAAAAGGCGATTAAAGTGATTATGCTTGCCCAGGAGGAAGCGAGGCGGCTTGGTCATAACTTCGTTGGCACGGAGCAGATCCTTTTGGGTCTTATTGGTGAAGGAACTGGTATTGCTGCTAAGGTTCTTAAATCCATGGGAATTAACCTTAAAGATGCTCGGGTCGAGGTCGAAAAGATTATTGGTCGGGGTAGTGGTTTTGTTGCTGTTGAAATTCCCTTCACTCCTCGTGCTAAGCGTGTTTTGGAACTTTCTCTCGAGGAAGCTCGCCAACTTGGCCACAATTATATTGGGTCGGAGCACTTGCTTCTGGGACTACTTCGTGAAGGGGAGGGCGTTGCAGCTCGTGTGCTTGAAAACTTAGGCGCTGATCCCACCAACATTCGAACTCAGGTTATTCGAATGGTGGGTGAGAGCACAGAGGCTGTTGGTGCTGGTGTTGGAGGAGGGACCAGTGGGAATAAGATGCCAACCCTGGAAGAGTATGGGACAAACTTAACCAAACTGGCTGAAGAGGGTAAACTGGATCCTGTTGTTGGCAGGCAACAGCAAATCGAACGTGTCACCCAAATTCTGGGTCGGCGGACAAAAAATAACCCTTGTCTTATTGGTGAACCTGGTGTTGGAAAAACTGCTATTGCTGAAGGTCTGGCCCAAAGGATTGCCAATGGGGATGTTCCTGAAACAATAGAAGGGAAGAAGGTTATAACTTTGGATATGGGTCTTCTTGTAGCTGGCACAAAATATCGTGGAGAGTTTGAGGAAAGATTAAAGAAATTGATGGAAGAAATAAAACAAAGTGATGAAATTATCCTTTTCATTGATGAAGTGCACACATTAATTGGAGCAGGGGCTGCTGAAGGAGCTATCGATGCAGCGAACATATTAAAACCTGCCCTTGCAAGGGGTGAACTGCAGTGCATTGGTGCTACAACATTGGATGAATACAGAAAGCACATTGAGAAAGACCCAGCCTTGGAAAGGCGATTTCAGCCGGTCAGAGTGCCAGAGCCATCTGTGGATGAAACCATACAGATTTTGAAAGGCCTTAGAGAGCGTTATGAAATTCATCACAAACTTCGTTATACAGATGAAGCATTAGTAGCTGCTGCACAGCTGTCATACCAGTACATCAGTGATCGATTCTTGCCTGATAAGGCAATCGACTTGGTTGATGAAGCTGGTTCCCGAGTTCGCCTTCGTCATGCCCAGTTACCTGAGGAAGCTCGAGAGCTTGAGAAAGAGCTTAGGCAGATCACAAAGGAGAAGAATGAGGCTGTTCGAAGTCAAGACTTTGAGAAGGCCGGAGAATTGCGTGATAGAGAAATGGAATTTAAGACTAAGATCTCTGCTCTGATAGATAAGGGCAAGGAGATGAGTAAGGCAGAAAGTGAGGCAGGAGATGTAGGTCCTGTTGTGACTGAAGTTGATATTCAGCATATTGTCTCCTCGTGGACTGGCATTCCTGTCGAGAAAGTATCCACAGATGAATCTGACCGCCTCCTCAAAATGGAAGCAACCCTGCACACGAGGGTCATTGGTCAAGATGAAGCAGTTAAAGCCATCAGCCGTGCCATACGCCGAGCTCGTGTTGGACTCAAGAATCCCAATCGTCCAATCGCAAGCTTTATATTTTCTGGCCCAACTGGTGTTGGTAAATCTGAGTTAGCAAAAGCATTGGCCGCCTACTATTTTGGCTCAGAAGAAGCAATGATTCGTCTGGACATGAGTGAATTTATGGAAAGACATACTGTCTCCAAGCTCATTGGTTCGCCGCCTGGTTATGTTGGTTACACAGAGGGCGGTCAATTAACTGAGGCTGTTCGTCGTCGTCCATACACAGTGGTTCTCTTTGATGAGATTGAAAAGGCTCATCCTGACGTGTTCAACATGATGCTTCAAATTCTAGAGGATGGAAGGTTGACAGACAGCAAGGGTAGAACAGTAGACTTCAAGAATACCCTTCTGATAATGACATCAAATGTTGGAAGCAGTGTCATAGAGAAGGGAGGCCGTAGAATAGGGTTCGACCTTGACTACGACGAGAAGGACAGTAGTTATAACCGCATCAAGAGCTTGGTGACAGAGGAACTGAAACAATACTTCAGGCCTGAGTTTTTGAACAGGTTGGACGAGATGATCGTGTTCCGCCAGCTCACAAAACTGGAAGTGAAGGAGATTGCAGACATAATGCTGAAGGAGGTATTCGAAAGATTGAAAACAAAAGAAATTGAACTTCAAGTGACCGAGAGGTTTAGAGACAGGGTGGTTGAGGAAGGATACAATCCAAGCTACGGTGCAAGACCATTGAGGAGGGCAATTATGAGACTCTTGGAGGACAGCATGGCGGAGAAGATGCTTGCAAGGGAGATCAAGGAAGGTGACTCAGTAATTGTGGATGTCGATTCAGATGGAAACGTGACCGTGCTCAACGGCAGCAGTGGTGCTGCTCCGGAGTCTTTGGCGGACGCTATCTCTGTGTAA 2772 46.68 MARVLVQSTNLPGLVAGRKSTPSRGSGNGKRAVKMMSSVHAPGSAIRSFSGLRGHNSLDNMLRTGQDFHSKMALAISSRKGKASRCVAKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGESTEAVGAGVGGGTSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVRVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLVDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRSQDFEKAGELRDREMEFKTKISALIDKGKEMSKAESEAGDVGPVVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEATLHTRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKTKEIELQVTERFRDRVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGSSGAAPESLADAISV 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7991481 7998150 - Sed0011803.1 Sed01g1068 700372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1068 923 FunFam ATP-dependent Clp protease ATP-binding subunit ClpC 91 239 - -
Sed01g1068 923 SMART AAA_5 292 432 IPR003593 GO:0016887(InterPro)
Sed01g1068 923 SMART AAA_5 635 816 IPR003593 GO:0016887(InterPro)
Sed01g1068 923 FunFam ATP-dependent Clp protease subunit 588 813 - -
Sed01g1068 923 CDD AAA 275 427 - -
Sed01g1068 923 ProSiteProfiles Clp repeat (R) domain profile. 92 234 IPR004176 -
Sed01g1068 923 ProSitePatterns Chaperonins clpA/B signature 2. 669 687 IPR028299 -
Sed01g1068 923 Gene3D - 815 912 - -
Sed01g1068 923 Pfam Clp amino terminal domain, pathogenicity island component 106 158 IPR004176 -
Sed01g1068 923 Pfam Clp amino terminal domain, pathogenicity island component 182 233 IPR004176 -
Sed01g1068 923 Gene3D - 246 435 IPR027417 -
Sed01g1068 923 Coils Coil 346 366 - -
Sed01g1068 923 SMART ClpB_D2_small_2 815 905 IPR019489 -
Sed01g1068 923 PANTHER ATP-DEPENDENT CLP PROTEASE 93 902 IPR050130 GO:0005737(PANTHER)|GO:0016887(PANTHER)|GO:0034605(PANTHER)
Sed01g1068 923 Pfam ATPase family associated with various cellular activities (AAA) 297 409 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed01g1068 923 Pfam C-terminal, D2-small domain, of ClpB protein 815 895 IPR019489 -
Sed01g1068 923 Gene3D - 587 813 IPR027417 -
Sed01g1068 923 Gene3D UVR domain 501 565 - -
Sed01g1068 923 SUPERFAMILY Double Clp-N motif 93 234 IPR036628 -
Sed01g1068 923 CDD RecA-like_ClpB_Hsp104-like 596 812 - -
Sed01g1068 923 Gene3D - 91 239 IPR036628 -
Sed01g1068 923 Coils Coil 498 525 - -
Sed01g1068 923 ProSiteProfiles UVR domain profile. 509 544 IPR001943 GO:0005515(InterPro)
Sed01g1068 923 FunFam Chaperone clpB 1, putative 243 435 - -
Sed01g1068 923 Pfam AAA domain (Cdc48 subfamily) 634 808 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed01g1068 923 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 746 760 IPR001270 GO:0005524(InterPro)
Sed01g1068 923 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 684 702 IPR001270 GO:0005524(InterPro)
Sed01g1068 923 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 713 731 IPR001270 GO:0005524(InterPro)
Sed01g1068 923 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 639 657 IPR001270 GO:0005524(InterPro)
Sed01g1068 923 MobiDBLite consensus disorder prediction 13 27 - -
Sed01g1068 923 FunFam ATP-dependent Clp protease ATP-binding subunit 436 520 - -
Sed01g1068 923 MobiDBLite consensus disorder prediction 1 32 - -
Sed01g1068 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 584 901 IPR027417 -
Sed01g1068 923 FunFam ATP-dependent chaperone ClpB 815 907 - -
Sed01g1068 923 Pfam AAA lid domain 435 536 IPR041546 -
Sed01g1068 923 ProSitePatterns Chaperonins clpA/B signature 1. 387 399 IPR018368 GO:0005524(InterPro)
Sed01g1068 923 Gene3D - 437 581 - -
Sed01g1068 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 252 534 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1068 K03696 - - csv:101207083 1653.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1068 Sed-Chr1:7991481 Sed07g2785 Sed-Chr7:42834846 1.20E-200 dispersed
Sed05g1734 Sed-Chr5:31151099 Sed01g1068 Sed-Chr1:7991481 9.60E-201 transposed
Sed06g0930 Sed-Chr6:11964985 Sed01g1068 Sed-Chr1:7991481 1.70E-202 transposed
Sed01g1068 Sed-Chr1:7991481 Sed13g1367 Sed-Chr13:19163838 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g30 . . . . Bpe12g00459 . . . . . . . . . Sed01g1068 . Cpe04g01638 Bhi02g00620 Tan09g2434 Cmetu06g1260 . Hepe09g0012 . . . . . . . . . . . . . . . . . . . . . . . . Bma08g00280 . . . . . . . . . . . . . . . . . . . . . . . . . Chy02g02702 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002235 2 2 2 1 2 2 3 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 1 2 2 1 63