Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1076 ATGGATTTCTCTTCTGTTCCACTCTATTTAGATCCTCCTCTCAATTGGCATCACCAGCAATCAAATCATCATCATCAGATAACCAATAATGGATCTCCTCATCAACAACAGCTTCCCTCACTGCCAGTTCATCAACAACTACCATCAGCACCGCCCGGTGGTAGCGGGATTAACTCGATCCGCCGTGGATCTATGGCAGACCGTGCTCGGATGGCCAACCTACCGCTACCCGAAATGGCTCTCAAGTGTCCTCGATGCGATTCCACCAACACAAAGTTCTGTTACTTCAACAACTACAACCTCTCTCAACCTCGACACTTCTGCAAGGCCTGCCGCCGCTACTGGACTCGTGGGGGCTCCCTACGAAACGTCCCGGTCGGGGGCGGTTGTCGTAGGAATAAGAAGAACAAGACTAGACAACGCTCAAAGTCTCCAGCGGCTGGGAACGGTGAGCAGCTGAATAACAATAACAATTCAAACTCACCCACCACTACAATTCCCTTGCAACAACCTCACCTTTCATTCATGGCTTCATTGAATAATTTCTCTCGATATGGAACATCAAATTTAGGGTTGAATTTCAACGAGATCGAAAACGGACCCGTTTCGAATCATCAGTGGCGAAGTTCTCAAAACTTTCCTTTCTTAGATAGCCTCGAAACCCCAATGGGGTTGTACCCATTTCAAATGAGTGAAAATACAACAAATTCAATCCTAACATCAAATTCAAGGGAGACCCATTTGCCACCGGTGAAGATTGAAGAAACCCAAGTGCTGAATTTGTTAAAATCATCAAATCAATTTTGGAGCAATGGAAATGGATGGACAGATGTTTCAGCTATCAGTTCTTCAAGTGGACATATTTCTTGCGACTTCAATCATTAA 885 45.2 MDFSSVPLYLDPPLNWHHQQSNHHHQITNNGSPHQQQLPSLPVHQQLPSAPPGGSGINSIRRGSMADRARMANLPLPEMALKCPRCDSTNTKFCYFNNYNLSQPRHFCKACRRYWTRGGSLRNVPVGGGCRRNKKNKTRQRSKSPAAGNGEQLNNNNNSNSPTTTIPLQQPHLSFMASLNNFSRYGTSNLGLNFNEIENGPVSNHQWRSSQNFPFLDSLETPMGLYPFQMSENTTNSILTSNSRETHLPPVKIEETQVLNLLKSSNQFWSNGNGWTDVSAISSSSGHISCDFNH 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8089939 8091945 - Sed0024935.1 Sed01g1076 700380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1076 294 MobiDBLite consensus disorder prediction 125 168 - -
Sed01g1076 294 Pfam Dof domain, zinc finger 80 135 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed01g1076 294 ProSitePatterns Zinc finger Dof-type signature. 83 119 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed01g1076 294 MobiDBLite consensus disorder prediction 142 168 - -
Sed01g1076 294 ProSiteProfiles Zinc finger Dof-type profile. 81 135 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed01g1076 294 MobiDBLite consensus disorder prediction 14 61 - -
Sed01g1076 294 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 71 229 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g1076 294 MobiDBLite consensus disorder prediction 15 44 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1076 Sed-Chr1:8089939 Sed13g1381 Sed-Chr13:19271891 3.20E-99 dispersed
Sed01g1076 Sed-Chr1:8089939 Sed13g1380 Sed-Chr13:19271891 8.60E-105 wgd
Sed01g1076 Sed-Chr1:8089939 Sed04g2829 Sed-Chr4:40196822 9.10E-46 wgd
Sed01g1076 Sed-Chr1:8089939 Sed05g2954 Sed-Chr5:40315474 1.00E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37181 PF02701 zf-Dof 1.20E-32 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1076 - - - 0.0