Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g1076 | ATGGATTTCTCTTCTGTTCCACTCTATTTAGATCCTCCTCTCAATTGGCATCACCAGCAATCAAATCATCATCATCAGATAACCAATAATGGATCTCCTCATCAACAACAGCTTCCCTCACTGCCAGTTCATCAACAACTACCATCAGCACCGCCCGGTGGTAGCGGGATTAACTCGATCCGCCGTGGATCTATGGCAGACCGTGCTCGGATGGCCAACCTACCGCTACCCGAAATGGCTCTCAAGTGTCCTCGATGCGATTCCACCAACACAAAGTTCTGTTACTTCAACAACTACAACCTCTCTCAACCTCGACACTTCTGCAAGGCCTGCCGCCGCTACTGGACTCGTGGGGGCTCCCTACGAAACGTCCCGGTCGGGGGCGGTTGTCGTAGGAATAAGAAGAACAAGACTAGACAACGCTCAAAGTCTCCAGCGGCTGGGAACGGTGAGCAGCTGAATAACAATAACAATTCAAACTCACCCACCACTACAATTCCCTTGCAACAACCTCACCTTTCATTCATGGCTTCATTGAATAATTTCTCTCGATATGGAACATCAAATTTAGGGTTGAATTTCAACGAGATCGAAAACGGACCCGTTTCGAATCATCAGTGGCGAAGTTCTCAAAACTTTCCTTTCTTAGATAGCCTCGAAACCCCAATGGGGTTGTACCCATTTCAAATGAGTGAAAATACAACAAATTCAATCCTAACATCAAATTCAAGGGAGACCCATTTGCCACCGGTGAAGATTGAAGAAACCCAAGTGCTGAATTTGTTAAAATCATCAAATCAATTTTGGAGCAATGGAAATGGATGGACAGATGTTTCAGCTATCAGTTCTTCAAGTGGACATATTTCTTGCGACTTCAATCATTAA | 885 | 45.2 | MDFSSVPLYLDPPLNWHHQQSNHHHQITNNGSPHQQQLPSLPVHQQLPSAPPGGSGINSIRRGSMADRARMANLPLPEMALKCPRCDSTNTKFCYFNNYNLSQPRHFCKACRRYWTRGGSLRNVPVGGGCRRNKKNKTRQRSKSPAAGNGEQLNNNNNSNSPTTTIPLQQPHLSFMASLNNFSRYGTSNLGLNFNEIENGPVSNHQWRSSQNFPFLDSLETPMGLYPFQMSENTTNSILTSNSRETHLPPVKIEETQVLNLLKSSNQFWSNGNGWTDVSAISSSSGHISCDFNH | 294 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 8089939 | 8091945 | - | Sed0024935.1 | Sed01g1076 | 700380 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g1076 | 294 | MobiDBLite | consensus disorder prediction | 125 | 168 | - | - | |
Sed01g1076 | 294 | Pfam | Dof domain, zinc finger | 80 | 135 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed01g1076 | 294 | ProSitePatterns | Zinc finger Dof-type signature. | 83 | 119 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed01g1076 | 294 | MobiDBLite | consensus disorder prediction | 142 | 168 | - | - | |
Sed01g1076 | 294 | ProSiteProfiles | Zinc finger Dof-type profile. | 81 | 135 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed01g1076 | 294 | MobiDBLite | consensus disorder prediction | 14 | 61 | - | - | |
Sed01g1076 | 294 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 71 | 229 | IPR045174 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g1076 | 294 | MobiDBLite | consensus disorder prediction | 15 | 44 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1076 | Sed-Chr1:8089939 | Sed13g1381 | Sed-Chr13:19271891 | 3.20E-99 | dispersed | |
Sed01g1076 | Sed-Chr1:8089939 | Sed13g1380 | Sed-Chr13:19271891 | 8.60E-105 | wgd | |
Sed01g1076 | Sed-Chr1:8089939 | Sed04g2829 | Sed-Chr4:40196822 | 9.10E-46 | wgd | |
Sed01g1076 | Sed-Chr1:8089939 | Sed05g2954 | Sed-Chr5:40315474 | 1.00E-44 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37181 | PF02701 | zf-Dof | 1.20E-32 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g1076 | - | - | - | 0.0 |