Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1076 ATGGATTTCTCTTCTGTTCCACTCTATTTAGATCCTCCTCTCAATTGGCATCACCAGCAATCAAATCATCATCATCAGATAACCAATAATGGATCTCCTCATCAACAACAGCTTCCCTCACTGCCAGTTCATCAACAACTACCATCAGCACCGCCCGGTGGTAGCGGGATTAACTCGATCCGCCGTGGATCTATGGCAGACCGTGCTCGGATGGCCAACCTACCGCTACCCGAAATGGCTCTCAAGTGTCCTCGATGCGATTCCACCAACACAAAGTTCTGTTACTTCAACAACTACAACCTCTCTCAACCTCGACACTTCTGCAAGGCCTGCCGCCGCTACTGGACTCGTGGGGGCTCCCTACGAAACGTCCCGGTCGGGGGCGGTTGTCGTAGGAATAAGAAGAACAAGACTAGACAACGCTCAAAGTCTCCAGCGGCTGGGAACGGTGAGCAGCTGAATAACAATAACAATTCAAACTCACCCACCACTACAATTCCCTTGCAACAACCTCACCTTTCATTCATGGCTTCATTGAATAATTTCTCTCGATATGGAACATCAAATTTAGGGTTGAATTTCAACGAGATCGAAAACGGACCCGTTTCGAATCATCAGTGGCGAAGTTCTCAAAACTTTCCTTTCTTAGATAGCCTCGAAACCCCAATGGGGTTGTACCCATTTCAAATGAGTGAAAATACAACAAATTCAATCCTAACATCAAATTCAAGGGAGACCCATTTGCCACCGGTGAAGATTGAAGAAACCCAAGTGCTGAATTTGTTAAAATCATCAAATCAATTTTGGAGCAATGGAAATGGATGGACAGATGTTTCAGCTATCAGTTCTTCAAGTGGACATATTTCTTGCGACTTCAATCATTAA 885 45.2 MDFSSVPLYLDPPLNWHHQQSNHHHQITNNGSPHQQQLPSLPVHQQLPSAPPGGSGINSIRRGSMADRARMANLPLPEMALKCPRCDSTNTKFCYFNNYNLSQPRHFCKACRRYWTRGGSLRNVPVGGGCRRNKKNKTRQRSKSPAAGNGEQLNNNNNSNSPTTTIPLQQPHLSFMASLNNFSRYGTSNLGLNFNEIENGPVSNHQWRSSQNFPFLDSLETPMGLYPFQMSENTTNSILTSNSRETHLPPVKIEETQVLNLLKSSNQFWSNGNGWTDVSAISSSSGHISCDFNH 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8089939 8091945 - Sed0024935.1 Sed01g1076 700380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1076 294 MobiDBLite consensus disorder prediction 125 168 - -
Sed01g1076 294 Pfam Dof domain, zinc finger 80 135 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed01g1076 294 ProSitePatterns Zinc finger Dof-type signature. 83 119 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed01g1076 294 MobiDBLite consensus disorder prediction 142 168 - -
Sed01g1076 294 ProSiteProfiles Zinc finger Dof-type profile. 81 135 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed01g1076 294 MobiDBLite consensus disorder prediction 14 61 - -
Sed01g1076 294 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 71 229 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g1076 294 MobiDBLite consensus disorder prediction 15 44 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1076 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1076 Sed-Chr1:8089939 Sed13g1381 Sed-Chr13:19271891 3.20E-99 dispersed
Sed01g1076 Sed-Chr1:8089939 Sed13g1380 Sed-Chr13:19271891 8.60E-105 wgd
Sed01g1076 Sed-Chr1:8089939 Sed04g2829 Sed-Chr4:40196822 9.10E-46 wgd
Sed01g1076 Sed-Chr1:8089939 Sed05g2954 Sed-Chr5:40315474 1.00E-44 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g2154 . 12 166 C2C2-Dof Transcription Factor Family AT1G29160 55.2 3.1e-41 166.0
Sed10g0236 . 6 155 C2C2-Dof Transcription Factor Family AT1G29160 54.5 2.6e-40 162.9
Sed01g2154 . 12 166 C2C2-Dof Transcription Factor Family AT2G34140 54.7 4.2e-43 172.2
Sed10g0236 . 6 155 C2C2-Dof Transcription Factor Family AT2G34140 53.4 6.9e-38 154.8
Sed04g1274 . 1 127 C2C2-Dof Transcription Factor Family AT2G37590 63.8 1.4e-39 161.4
Sed03g0078 . 1 131 C2C2-Dof Transcription Factor Family AT2G37590 63.8 7.1e-39 159.1
Sed01g2759 . 1 135 C2C2-Dof Transcription Factor Family AT2G37590 65.7 2.7e-38 157.1
Sed01g1076 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 55.5 1.5e-36 151.4
Sed08g0219 . 102 453 C2C2-Dof Transcription Factor Family AT3G47500 52.4 8.0e-86 315.5
Sed01g1076 . 1 133 C2C2-Dof Transcription Factor Family AT5G02460 58.3 7.0e-41 166.0
Sed13g1381 . 1 116 C2C2-Dof Transcription Factor Family AT5G02460 58.1 1.0e-39 162.2
Sed13g1380 . 1 124 C2C2-Dof Transcription Factor Family AT5G02460 57.2 4.3e-38 156.8
Sed01g2759 . 1 135 C2C2-Dof Transcription Factor Family AT5G02460 64.6 2.8e-37 154.1
Sed05g2954 . 46 122 C2C2-Dof Transcription Factor Family AT5G02460 88.3 1.8e-36 151.4
Sed03g0078 . 1 131 C2C2-Dof Transcription Factor Family AT5G02460 62.6 2.3e-36 151.0
Sed13g1380 . 27 198 C2C2-Dof Transcription Factor Family AT3G55370 50.8 1.6e-39 161.4
Sed13g1381 . 19 190 C2C2-Dof Transcription Factor Family AT3G55370 50.8 1.6e-39 161.4
Sed04g1274 . 48 133 C2C2-Dof Transcription Factor Family AT3G55370 76.7 1.7e-36 151.4
Sed08g0300 . 28 302 C2C2-Dof Transcription Factor Family AT5G60850 50.2 8.6e-47 185.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005685 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37181 PF02701 zf-Dof 1.20E-32 No_clan Sed TF