Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1077 ATGGATGAAGATACCGCTGCTCTGATTCAGAGCTTGATCGATGTGGTGAACGAGATTGCATGGATCTCGGATTTTAGGCTTACTGTGAAGAAGCAGTATTGCAATTTGTCCAGGAGATTGAAGCTTTTGATCCCAATGTTTGAAGAGATTAGGGATTGCAAGCAGCCAGTCCCTGATAATACTCTCAAGGCTCTCGTATTGTTGAAAGAAGCTCTCGAATCGGCGAAGAAGTTGCTCAGATTTGGAAGCGAGGGGAGTAAGATTTTCCTGGCTGTAGAGAGGGAGCAAATTATGAACAAATTTCACGATGTAACGGCTCGCTTGGAACAAGCTTTGGAAGGAATAGCCTATGATAAACTTGATATATCCGATGAAGTTAAAGAGCAGGTCGAGCTTGTTCTTGGACAGTTCAGAAGAGCTAATGGCAGAGTCGATGCACCTGACTCTGAGTTGTTGGATGATATCGTTGCCCTTTATAATACAAGCAACAATTCTTCTGTAGATCAAGACCGCCTAAAAAGATTAGCTGAAAAATTACAACTAATCGGAATTTCCGATCTTACACAAGAGTCCATGGCTTTGCATGAGATGGCTACTCCTAGTGGAGGAGATCCGGGCGAGAGCATTGAGAAGATGTTAGGAATGCTGAAAAAAATAAAAGACTTTGTGCAAAAGGAGAACCTCGAAACAGACACTCCTAAGAGTCTTCCAGCTAGTTGTAGTGGGCAAATATCCAATGAGAAAAATAATAAGGCCCCAATTATACCAGATGATTTTCGCTGCCCAATATCCCTGGAGTTGATGAGAGATCCTGTCATTGTCTCAACTGGACAGACCTATGAACGCTCCTGCATTGAAAAGTGGCTTGAAGCAGGACACGGGACGTGCCCAAAGACACAACAGAACCTTTCAAGCACTACTCTTACCCCCAATTACGTGTTGCGTAGTCTTATAGCCCAATGGTGCGAGGCTAATGGTATTGAACCACCAAAGCGACCCAGCAGTGCTCGACCATCTAGAAGTTCATCATCTTGCTCACCCGCCGAACGCACAAAGATTGATATTCTTCTTTCCAAACTTGCATCTGGAAATCCTGAAGATCAACGATCTGCAGCTGGTGAGATCCGACTTCTTGCAAAGCGGAATGCAGATAATCGTGTTGCGATTGCTGAGGCTGGCGCAATACCTCTCCTTGTCGGGCTTCTTTCAACTCCAGATTCTCGTGTTCAAGAGCATGTTGTGACAGCACTTCTTAACCTTTCTATATGTGAAAACAATAAGGGAAGCATCATTTCCGCTGGGGCAGTTCCTGGTATTGTTCTCGTGCTCAAGAAGGGGAGCATGGAAGCACGGGAGAATGCTGCAGCCACTCTTTTCAGCCTTTCAGTTGTAGATGAAAATAAAGTTAGAATTGGTGCCTCTGGAGCCATCCCACCACTCGTTACGCTGCTTAGCGAAGGCACTCAAAGGGGTAAGAAAGATGCTGCAACTGCTCTTTTCAACTTATGCATCTACCAAGGAAACAAGGGAAAGGCAGTGAGAGCTGGTGTAGTTCCAACCTTGATGCAGCTGCTCGCTGAACCAGGAACCGGAATGGTGGATGAAGCTTTAGCCATCTTAGCAATACTCTCTAGCCATTCCGAAGGGAAAGCTGCCATCGGATCTGCGAAGGCAGTGCCAGTTTTGGTAGCTGTTATCGGGACAGGATCCCCCAGGAACAAAGAGAACGCAGCAGCAGTTCTTGTGCATCTCTGCTCTGGAGATGAACAACATTTAGTAGAGGCCAGGGATCATGGAGTGACCAGTTCATTAATTGATTTAGCACGCAATGGCACGGATAGAGGCAAGCGAAAAGCTGCTCAGTTGCTTGAGCGAATAAACCGACTCTTCGAGCATGCAGTTCATCCAGAGGAGATTCGGGTGCAAGCGCCAGAGTCTCAACCTCAAAACCAGCCATCACATCCGACCTCTACGACCGAAGACGTTGGTAGCTAA 1995 46.27 MDEDTAALIQSLIDVVNEIAWISDFRLTVKKQYCNLSRRLKLLIPMFEEIRDCKQPVPDNTLKALVLLKEALESAKKLLRFGSEGSKIFLAVEREQIMNKFHDVTARLEQALEGIAYDKLDISDEVKEQVELVLGQFRRANGRVDAPDSELLDDIVALYNTSNNSSVDQDRLKRLAEKLQLIGISDLTQESMALHEMATPSGGDPGESIEKMLGMLKKIKDFVQKENLETDTPKSLPASCSGQISNEKNNKAPIIPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQNLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPSSARPSRSSSSCSPAERTKIDILLSKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHVVTALLNLSICENNKGSIISAGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLAEPGTGMVDEALAILAILSSHSEGKAAIGSAKAVPVLVAVIGTGSPRNKENAAAVLVHLCSGDEQHLVEARDHGVTSSLIDLARNGTDRGKRKAAQLLERINRLFEHAVHPEEIRVQAPESQPQNQPSHPTSTTEDVGS 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8109319 8113968 - Sed0016957.1 Sed01g1077 700381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1077 664 SMART Ubox_2 258 321 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed01g1077 664 MobiDBLite consensus disorder prediction 638 664 - -
Sed01g1077 664 MobiDBLite consensus disorder prediction 643 664 - -
Sed01g1077 664 FunFam RING-type E3 ubiquitin transferase 336 632 - -
Sed01g1077 664 PANTHER U BOX DOMAIN-CONTAINING 29 627 - -
Sed01g1077 664 Pfam Armadillo/beta-catenin-like repeat 465 503 IPR000225 GO:0005515(InterPro)
Sed01g1077 664 Pfam Armadillo/beta-catenin-like repeat 547 586 IPR000225 GO:0005515(InterPro)
Sed01g1077 664 Pfam Armadillo/beta-catenin-like repeat 382 421 IPR000225 GO:0005515(InterPro)
Sed01g1077 664 Gene3D - 5 117 IPR036537 GO:0007166(InterPro)
Sed01g1077 664 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515(InterPro)
Sed01g1077 664 FunFam RING-type E3 ubiquitin transferase 255 328 - -
Sed01g1077 664 CDD RING-Ubox_PUB 256 308 IPR045210 -
Sed01g1077 664 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 328 IPR013083 -
Sed01g1077 664 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed01g1077 664 CDD MLKL_NTD 10 138 - -
Sed01g1077 664 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 393 435 IPR000225 GO:0005515(InterPro)
Sed01g1077 664 Pfam U-box domain 255 325 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed01g1077 664 SUPERFAMILY RING/U-box 249 331 - -
Sed01g1077 664 Gene3D - 490 643 IPR011989 -
Sed01g1077 664 Gene3D - 340 489 IPR011989 -
Sed01g1077 664 SMART arm_5 546 586 IPR000225 GO:0005515(InterPro)
Sed01g1077 664 SMART arm_5 588 628 IPR000225 GO:0005515(InterPro)
Sed01g1077 664 SMART arm_5 423 463 IPR000225 GO:0005515(InterPro)
Sed01g1077 664 SMART arm_5 464 504 IPR000225 GO:0005515(InterPro)
Sed01g1077 664 SMART arm_5 505 545 IPR000225 GO:0005515(InterPro)
Sed01g1077 664 SMART arm_5 382 422 IPR000225 GO:0005515(InterPro)
Sed01g1077 664 MobiDBLite consensus disorder prediction 328 348 - -
Sed01g1077 664 FunFam RING-type E3 ubiquitin transferase 5 118 - -
Sed01g1077 664 SUPERFAMILY ARM repeat 353 626 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0633 Sed-Chr1:4550941 Sed01g1077 Sed-Chr1:8109319 1.80E-83 dispersed
Sed01g1077 Sed-Chr1:8109319 Sed13g1383 Sed-Chr13:19282203 1.30E-153 dispersed
Sed08g1852 Sed-Chr8:33161824 Sed01g1077 Sed-Chr1:8109319 3.90E-13 dispersed
Sed01g1077 Sed-Chr1:8109319 Sed13g1382 Sed-Chr13:19282203 2.60E-218 wgd
Sed01g1077 Sed-Chr1:8109319 Sed05g2955 Sed-Chr5:40327452 4.00E-142 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1077 K27628 - csv:101218572 1071.61