Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1092 ATGGGTACAGCAACAACAGCGATTCTCCTCTTCATCACATCTCTCATTCTCACAATAACGCCAACCGCCGCAAGAATCCCGGGCGTGTACTCCGGCGGCGCGTGGGAGAGCGCCCACGCCACGTTCTACGGCGGCGCCGACGCCTCCGGGACAATGGGTACGCCGGAAAAGTGGAATAAAAGCAGCCCGTCGGCTTGTGGGTACGGGAATTTGTACAGCGAAGGGTACGGGGTGAACACGGCGGCGTTGAGCACGGCGCTGTTCAACAGTGGGCTGAGCTGCGGCGCGTGTTTCGAGATCAAATGCGCGAGTGACCCGAGGTGGTGCCATTCGGGGAGCCCGTCCATTGTGATCACGGCCACCAACTTCTGCCCGCCCAACTTTGCTCTGCCCAGTGATAATGGGGGCTGGTGTAACCCGCCTCGCCCGCATTTCGACTTGGCTATGCCTATGTTTCTCAAGATCGCCGAGTATCGCGCCGGTATCGTCCTCGTCGCCTTCCGCCGGGTGCCATGCCGGAAGCAGGGGGGAGTCCGGTTCACAATCCACGGGTTCCGGTACTTCAACATGGTTTTAATAACCAACGTTGCAGGTGCAGGGGATATCGTGAGGGTGAGCGTGAAAGGCACGCGAACCGGGTGGTTGAGCATGAGCCGGAACTGGGGTCAAAACTGGCAGTCAAACGCCGTGTTGGTTGGCCAGGCGCTGTCGTTTAGGGTTACCGGCGGTGACAGAAGGACATCCACCTCCTACAACGTGGCGCCCTCTGATTGGCAGTTCGGCCAGACCTTCATCGGGAAGAATTTCAGGGTTTGA 816 59.31 MGTATTAILLFITSLILTITPTAARIPGVYSGGAWESAHATFYGGADASGTMGTPEKWNKSSPSACGYGNLYSEGYGVNTAALSTALFNSGLSCGACFEIKCASDPRWCHSGSPSIVITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVLVAFRRVPCRKQGGVRFTIHGFRYFNMVLITNVAGAGDIVRVSVKGTRTGWLSMSRNWGQNWQSNAVLVGQALSFRVTGGDRRTSTSYNVAPSDWQFGQTFIGKNFRV 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8212684 8219517 - Sed0018330.1 Sed01g1092 700396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1092 271 FunFam Expansin 177 269 - -
Sed01g1092 271 Pfam Expansin C-terminal domain 178 255 IPR007117 -
Sed01g1092 271 PRINTS Expansin/Lol pI family signature 214 228 IPR007118 GO:0005576(InterPro)
Sed01g1092 271 PRINTS Expansin/Lol pI family signature 160 176 IPR007118 GO:0005576(InterPro)
Sed01g1092 271 PRINTS Expansin/Lol pI family signature 252 266 IPR007118 GO:0005576(InterPro)
Sed01g1092 271 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576(InterPro)
Sed01g1092 271 SMART dpbb_1 80 167 IPR007112 -
Sed01g1092 271 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 63 177 IPR007112 -
Sed01g1092 271 Gene3D - 177 269 IPR036749 -
Sed01g1092 271 SUPERFAMILY Barwin-like endoglucanases 34 195 IPR036908 -
Sed01g1092 271 Gene3D - 22 173 IPR036908 -
Sed01g1092 271 PRINTS Expansin signature 152 165 IPR002963 GO:0009664(InterPro)
Sed01g1092 271 PRINTS Expansin signature 75 89 IPR002963 GO:0009664(InterPro)
Sed01g1092 271 PRINTS Expansin signature 135 152 IPR002963 GO:0009664(InterPro)
Sed01g1092 271 PRINTS Expansin signature 252 268 IPR002963 GO:0009664(InterPro)
Sed01g1092 271 PRINTS Expansin signature 188 209 IPR002963 GO:0009664(InterPro)
Sed01g1092 271 PRINTS Expansin signature 116 126 IPR002963 GO:0009664(InterPro)
Sed01g1092 271 PRINTS Expansin signature 176 188 IPR002963 GO:0009664(InterPro)
Sed01g1092 271 PRINTS Expansin signature 223 244 IPR002963 GO:0009664(InterPro)
Sed01g1092 271 PRINTS Expansin signature 102 113 IPR002963 GO:0009664(InterPro)
Sed01g1092 271 FunFam Expansin 24 173 - -
Sed01g1092 271 CDD DPBB_EXPA_N 35 172 - -
Sed01g1092 271 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 187 266 IPR007117 -
Sed01g1092 271 PANTHER EXPANSIN-A15 8 269 IPR002963 GO:0009664(InterPro)
Sed01g1092 271 Pfam Lytic transglycolase 80 166 IPR009009 -
Sed01g1092 271 SUPERFAMILY PHL pollen allergen 174 265 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1092 Sed-Chr1:8212684 Sed07g2495 Sed-Chr7:40621356 1.20E-124 dispersed
Sed01g1092 Sed-Chr1:8212684 Sed13g1396 Sed-Chr13:19376925 4.80E-134 wgd
Sed01g1092 Sed-Chr1:8212684 Sed04g2835 Sed-Chr4:40265268 2.70E-121 wgd
Sed01g1092 Sed-Chr1:8212684 Sed05g2978 Sed-Chr5:40441191 3.30E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1092 - - - 0.0