Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1103 ATGGACAATCCCCTCGACGATTTTCCCGATTCATGGAATAATTTTCATTTCTCTAATGGGTTGCTCATAGTCAACCGCGAGCTTCAGATTCCGGCCAAGAAACAGCAACATCAACCCCAACTCAGTAACAATTCGTCGCCGTCGCCGTCGCCGTCGCCGTCGAGCTCCGAGGGCGACTCGCCGGACAGCCATGATACCTCAAACACGATGCTCAAGTACATAACCGAGTTGCTGATGGACGAAGCAGAGGATCTCAAAACACAGCCCTGTATGCTTCTTGACTCTTTGGCTCTTCAAGCTGCTGAGAAATCCTTTTATGATGTTCTTGGTGAGAAATATCCCCCTTCTGCTCGTAATTTTAGCTGTGATTTAGGTTTTAGTAAGGGTGGAGATGAATCTGAATCTGTTCGTGAAAATTCCCCTGTTTTTGTTGCTCCTTTTCATAACCCTTTTTTGAGTCAAGATTCTTTTCTTGGGATGCAATTTATTGGTCAATTTAGGCAAGGAGCTGAGGAAGCTAGCAAGTTTCTTCCTGTTAATGGAAAATTTGGAACCATTGATTTGGATAATGATTTATCCGCTTCTGTTCCTTCTAGGGCTGTGGATTTTTCTTTAGCTGTTGCTGGGAGAGATGGTAGATCCAGCCTTGAAAATGGGCTGTTTAGAGATAAGAAGAATCATGAGAGGGGGGATAGTGATGAGGAGTTGAGAAGTACTAAACAATCTGCTACTTTTGCTGATGATAATTCACTGTCTGAGCTGTTTGATGAAGTTTTTCTGTGTCGGGGTGAGAGTCGACAGTCCCCGTTGGGCTGTTCGGACGAATCTTCAGAGAGTGAAACGAATAAGAAGTTGAAAAGTAAGATCAAAGGGAAGAAGACTCGTTCTAGGAAGCAAGAGAATAGTGTGGAAGTTGTGGATTTGTGGACATTGTTGACTCAATGTGCTCAGGCTGTTTCAAATTATGATCATAGGACTGCAAATGAGCTGCTCAATCAGATTAGGCAGCATTCTAACACGTCAGGGGATGGAAATCAGAGATTGGCTCATTACTTTGCCAAGGGCCTCGAAACTCGGCTTGCCGCCGGGACGCCTCTGTATATGCCCTTTGCAAGCAATGAAACCTCTGCTGCTGATATCTTGAAAACTTATCAGATGTTCATCAAGGCGAGCCCCTTTCGCCGGATGCCGTATTTCTATGCCAACAGAACGATTCTGAAGCTAGCTGAGAATGTAACAAGCCTTCATATTGTTGATTTTGGTATTTTGTATGGTCTCCAATGGCCCTGCTTGATTCAGCGGCTCTCGTGCAGACCTGGTGGACCTCCCAAGCTTCGGATCACAGGGATTGAGCTTCCCCAGCCTGGATTCCGCCCAGCTGAGCGGGTTGAGCAGACTGGCCGTCGGCTTGCACATTACTGCCAAAGGTTCAATGTGCCATTTGAACACAAGGTCTTGGCACAGAAATGGGAAACTGTTAAATATGAGGATCTCGATGTCAATAGAGATGAACTGACTATCGTGACTTGTATGTTCCGAATGAAGAATGTACCCGATGAAACTGTGGTCACAAACAGCCCAAGAGACAGGGTTCTGAAGTTGATCAGGAAAATCAACCCAAATCTCTTCATTCATGAAGTGATGAATGGCTCATTCAACACTCCATTCTTCAACACAAGGTTTAAGGTGGCACTCTTTTACTACTCATCTTTGTTCGACATGTTCGAGGCGACAGTGCCTCGAGATAATCCACAGAGGACTCTGTGCGAGAGGGAAATACTGGGAAGAGACATCATGAATGTCATAGCATGTGAGGGGCTCGAGAGAGTCGAAAGACCGGAGACGTACAAGCAATGGCAAGTAAGGAACATGAGGGCTGGGTTCAAGCAAGTACCATTAGACCAAGAACTGCTTGATAGTGTGAAGAAGATAGTGAACACGGAATATCATCAGGACTTCGGCATCGATCAAGATGGGGCGTGGATGTTGCAAGGGTGGAAGGGCCGGATCATCGACGGGTTGTCGTGTTGGGTAGTTGCCTAA 2043 45.91 MDNPLDDFPDSWNNFHFSNGLLIVNRELQIPAKKQQHQPQLSNNSSPSPSPSPSSSEGDSPDSHDTSNTMLKYITELLMDEAEDLKTQPCMLLDSLALQAAEKSFYDVLGEKYPPSARNFSCDLGFSKGGDESESVRENSPVFVAPFHNPFLSQDSFLGMQFIGQFRQGAEEASKFLPVNGKFGTIDLDNDLSASVPSRAVDFSLAVAGRDGRSSLENGLFRDKKNHERGDSDEELRSTKQSATFADDNSLSELFDEVFLCRGESRQSPLGCSDESSESETNKKLKSKIKGKKTRSRKQENSVEVVDLWTLLTQCAQAVSNYDHRTANELLNQIRQHSNTSGDGNQRLAHYFAKGLETRLAAGTPLYMPFASNETSAADILKTYQMFIKASPFRRMPYFYANRTILKLAENVTSLHIVDFGILYGLQWPCLIQRLSCRPGGPPKLRITGIELPQPGFRPAERVEQTGRRLAHYCQRFNVPFEHKVLAQKWETVKYEDLDVNRDELTIVTCMFRMKNVPDETVVTNSPRDRVLKLIRKINPNLFIHEVMNGSFNTPFFNTRFKVALFYYSSLFDMFEATVPRDNPQRTLCEREILGRDIMNVIACEGLERVERPETYKQWQVRNMRAGFKQVPLDQELLDSVKKIVNTEYHQDFGIDQDGAWMLQGWKGRIIDGLSCWVVA 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8281312 8283717 + Sed0016056.1 Sed01g1103 700407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1103 680 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 287 671 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Sed01g1103 680 MobiDBLite consensus disorder prediction 216 242 - -
Sed01g1103 680 ProSiteProfiles GRAS family profile. 299 678 IPR005202 -
Sed01g1103 680 MobiDBLite consensus disorder prediction 266 297 - -
Sed01g1103 680 MobiDBLite consensus disorder prediction 216 241 - -
Sed01g1103 680 MobiDBLite consensus disorder prediction 31 67 - -
Sed01g1103 680 Pfam GRAS domain family 310 677 IPR005202 -
Sed01g1103 680 MobiDBLite consensus disorder prediction 29 67 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1103 Sed-Chr1:8281312 Sed04g1258 Sed-Chr4:26450420 7.20E-155 dispersed
Sed01g1103 Sed-Chr1:8281312 Sed13g1411 Sed-Chr13:19473431 7.40E-301 wgd
Sed01g1103 Sed-Chr1:8281312 Sed05g2984 Sed-Chr5:40472508 6.30E-151 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37182 PF03514 GRAS 2.70E-112 CL0063 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1103 K27753 - csv:101217374 1088.94