Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed01g1111 | ATGGTTCCTCTTTTTCTCTTCATTGCTCTGTTTGTCCTTTTTCTCTGGTGCCTCCAATGGCGGCACCCAAATCACAAGCTCCTCCCCCCTGGCTCCATGGGCTGGCCTTACATAGGCGAAACCTTCAAACTCTACACCCAAAACCCAAACTCCTTCTTCTCCATTAGGCAAAAAAGATATGGTGATGTGTTCAAGACCCATATATTGGGCTGCCCATGTGTGATGATTTCCAGCCCTGAGGCAGCTAGAGTTGTGCTTGTGAGTAAGGCCCATCTCTTCAAGCCAACTTACCCTCCAAGCAAAGAGAAAATGATTGGCCCTCAAGCTCTGTTCTTTCACCAAGGCCCTTACCATTCTCGCCTCAAGAAGCTTGTTCAAGCCTCCTTTTTGCCCTCTGCTATCAAATCCTCTGTTTCTCAGATTGAAAACATTGTCCTCCACCTTCTCCCCTCTTGGATTCACTCTCAAGTTAATACCTTGCAGCAAATGAAAAGGTTTGCTTTTGATGTGGCAATGATATCTGCTTTTGGAGACCAACAAGACTTAGAAATAGAGAGAATCAAACATTTGTACCAATGCCTAGAAAAAGGCTACAATTCAATGCCACTAAATCTACCCGGAACCCCTTTTCGCAAAGCAATGAAGGCAAGGAAATTGCTGAGTGAGACATTGGGGAAGCTGATAGAGAAAAGACGGCGGAGCAAGGAGCACGGCGGTGGGTTGCTGGCGGTGCTACTAAACGGCGGTGGCGAGAACGTAAAGGAGAAAAATGACGAGCTGAGTGACTCACAAATAGCTGATAATATAATAGGAGTGATATTTGCAGCTCAAGACACAACAGCCAGTGTTTTGACATGGATTCTTAAGTACTTACACGACAATCACCATCTTCTCGAAGCTGTTAAGAACGAGCAAGAGGCAATTATGGAACGGAAAGTGTGCGAAGGTAGGCGGGGACTTACGTGGGATGATACCAGACGTATGCCGTTGACCTCTCGGGTGATCCAAGAAACCCTAAGAACAGCAAGTGTGCTGTCATTTACATTCAGAGAAGCAGTGGAAGAGGTTGAGTTTGAAGGATATTTAATCCCAAGAGGATGGAAAGTTCTTCCACTTTTCAGAACCATTCATCACTCTCCAGATTTCTTCCCACACCCTGAGAAGTTCGATCCTTCAAGATTCGAGGTGCCACCTAGACCAAACACGTACATGCCATTTGGCAACGGAGTGCATTCGTGTCCAGGCAGCGAGATGGCTAAGCTTGAAATGCTGGTTCTCCTCCACCACCTCACCACCACTTACAGATGGAAAGTGGTGGGAAATGAATCCGGGATACAATACGGTCCATTTCCTGTGCCAAAAGGTGGTTTACCCATAAAAGTATTTTCAAGGAACAAGAAGAAGAAGAAGATTACTTCCTAG | 1422 | 45.92 | MVPLFLFIALFVLFLWCLQWRHPNHKLLPPGSMGWPYIGETFKLYTQNPNSFFSIRQKRYGDVFKTHILGCPCVMISSPEAARVVLVSKAHLFKPTYPPSKEKMIGPQALFFHQGPYHSRLKKLVQASFLPSAIKSSVSQIENIVLHLLPSWIHSQVNTLQQMKRFAFDVAMISAFGDQQDLEIERIKHLYQCLEKGYNSMPLNLPGTPFRKAMKARKLLSETLGKLIEKRRRSKEHGGGLLAVLLNGGGENVKEKNDELSDSQIADNIIGVIFAAQDTTASVLTWILKYLHDNHHLLEAVKNEQEAIMERKVCEGRRGLTWDDTRRMPLTSRVIQETLRTASVLSFTFREAVEEVEFEGYLIPRGWKVLPLFRTIHHSPDFFPHPEKFDPSRFEVPPRPNTYMPFGNGVHSCPGSEMAKLEMLVLLHHLTTTYRWKVVGNESGIQYGPFPVPKGGLPIKVFSRNKKKKKITS | 473 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 8323582 | 8331189 | + | Sed0018376.1 | Sed01g1111 | 700415 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed01g1111 | 473 | PANTHER | CYTOCHROME P450 26 | 28 | 441 | - | GO:0004497(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER) | |
| Sed01g1111 | 473 | SUPERFAMILY | Cytochrome P450 | 20 | 464 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g1111 | 473 | CDD | CYP90-like | 56 | 462 | - | - | |
| Sed01g1111 | 473 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 406 | 415 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed01g1111 | 473 | Gene3D | Cytochrome P450 | 20 | 463 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g1111 | 473 | FunFam | Abscisic acid 8 | 19 | 463 | - | - | |
| Sed01g1111 | 473 | PRINTS | P450 superfamily signature | 404 | 413 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g1111 | 473 | PRINTS | P450 superfamily signature | 275 | 292 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g1111 | 473 | PRINTS | P450 superfamily signature | 413 | 424 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g1111 | 473 | PRINTS | P450 superfamily signature | 333 | 344 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g1111 | 473 | Pfam | Cytochrome P450 | 29 | 439 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g1111 | 473 | PRINTS | E-class P450 group I signature | 57 | 76 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g1111 | 473 | PRINTS | E-class P450 group I signature | 264 | 281 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g1111 | 473 | PRINTS | E-class P450 group I signature | 372 | 396 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g1111 | 473 | PRINTS | E-class P450 group I signature | 284 | 310 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g1111 | 473 | PRINTS | E-class P450 group I signature | 413 | 436 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g1111 | 473 | PRINTS | E-class P450 group I signature | 332 | 350 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g1111 | 473 | PRINTS | E-class P450 group I signature | 403 | 413 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g1111 | Sed-Chr1:8323582 | Sed07g0930 | Sed-Chr7:6788978 | 3.40E-159 | dispersed | |
| Sed01g1111 | Sed-Chr1:8323582 | Sed13g0736 | Sed-Chr13:5209111 | 1.80E-160 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed01g1111 | K09843 | - | csv:101216531 | 838.565 |