Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1124 ATGGCGGAGATTTGCTGTAAAGTGATGGGTGAGAGTGGCGCATCGTCGTCTTCCTGCGAGCCAAGCTCGCGAGTTGCCAGACGTCGGAGAATGGAGATCAGGAGGTGTAAATTTGTTGCCGGAGTTGCTCCGACGGAGACTGAAACTGTTGCGAAGCGACAGAAGCTCGAGGATCGAGCGGCGTCGCTCTCCCGAGACTGTGATAACACGGTTCAGAACTGTGATACAAGAGAAGAAGAAGAGACCGTCGTGAGATTTGTGGCGGAGGAAGTTCCGACGACGGAGATGTCTACAAGACAGACCTTGGATGATTCGACATCTCTGGATCGGGAATCTCCGAGCGTTCCTCTCGGCGGAGAGATTCCGAAGTTCGGATTCTCTTCTGTTTGCGGAAGACGGAGAGATATGGAAGACGCGGTGGCGGTTCATACTTCGCTCTGTTTTACTAACAAGGAAGCTACCGATAAGTTGCACTTATTCGGTGTTTACGACGGTCATGGCTGCTCTCATGTGGCGATGAGGTGTAAGGATCGACTTCACGAGCTCGTGAAAGAGGAGTTTGTAAGAGACGAAAACGATGAAGCCGCCGCGACGGCGGCGGCGGTGGCGTTGGATTGGGACGGTGCTATGAAGAGAATCTTCCAGCGCATGGACAACGAAGTTGTGACGCGAAACAATGAAGAAGTTATGGTTGCGAATTGCAGATGTGAACTGCAGTCGCCGGACTGCGATGCCGTCGGATCTACCGCCGTCGTCGCAATAGTGACGCCGGATAAAATCATCGTCGCTAACTGCGGCGATTCCAGAGCCGTTCTCTGCCGCAACGGAAAGGCCGTTCCTCTCTCCTCCGATCACAAGCCGGACCGGCCCGATGAACTAAAACGGATTGAGGAAGCCGGCGGCCGAGTTATCTACTGGGACGGACCGAGAGTTCTCGGAGTTCTCGCCATGTCAAGAGCCATAGGCGATAACTATCTGAAACCGTATGTGATATCGGAGCCGGAGGTGACGATAACAGATCGGACGGCGGAGGACGAGTGCCTGATTCTGGCGAGCGACGGGCTGTGGGATGTGGTGCCGAACGACACGGCGTGTGGAGTGGCGAGTATGTGCCTCCGGGGGAAGGCGGAGGATCGGTCTCCACCGCCGTCGACGGCGGAGAACGTGGACAAGGCGTGCAACGATGCGGCGATGCTGCTGACGAAGCTGGCTCTGGCCAGGCACAGTACGGACAACGTGAGCGTCGTGGTGGTGGACCTTAAGAGAGACACGTAG 1275 56.0 MAEICCKVMGESGASSSSCEPSSRVARRRRMEIRRCKFVAGVAPTETETVAKRQKLEDRAASLSRDCDNTVQNCDTREEEETVVRFVAEEVPTTEMSTRQTLDDSTSLDRESPSVPLGGEIPKFGFSSVCGRRRDMEDAVAVHTSLCFTNKEATDKLHLFGVYDGHGCSHVAMRCKDRLHELVKEEFVRDENDEAAATAAAVALDWDGAMKRIFQRMDNEVVTRNNEEVMVANCRCELQSPDCDAVGSTAVVAIVTPDKIIVANCGDSRAVLCRNGKAVPLSSDHKPDRPDELKRIEEAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTITDRTAEDECLILASDGLWDVVPNDTACGVASMCLRGKAEDRSPPPSTAENVDKACNDAAMLLTKLALARHSTDNVSVVVVDLKRDT 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8384997 8387150 - Sed0008974.1 Sed01g1124 700428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1124 424 ProSiteProfiles PPM-type phosphatase domain profile. 123 420 IPR001932 -
Sed01g1124 424 MobiDBLite consensus disorder prediction 93 114 - -
Sed01g1124 424 CDD PP2Cc 123 420 IPR001932 -
Sed01g1124 424 FunFam Protein phosphatase 2C 51 118 424 - -
Sed01g1124 424 Pfam Protein phosphatase 2C 124 413 IPR001932 -
Sed01g1124 424 SMART PP2C_4 113 418 IPR001932 -
Sed01g1124 424 MobiDBLite consensus disorder prediction 93 112 - -
Sed01g1124 424 PANTHER PROTEIN PHOSPHATASE 81 419 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed01g1124 424 ProSitePatterns PPM-type phosphatase domain signature. 159 167 IPR000222 GO:0043169(InterPro)
Sed01g1124 424 Coils Coil 53 73 - -
Sed01g1124 424 Gene3D - 119 424 IPR036457 -
Sed01g1124 424 SUPERFAMILY PP2C-like 120 421 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1124 Sed-Chr1:8384997 Sed11g2210 Sed-Chr11:35695923 1.50E-94 dispersed
Sed01g1124 Sed-Chr1:8384997 Sed01g1125 Sed-Chr1:8384997 2.10E-184 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1124 K14497 - csv:101206871 629.017