Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1125 ATGGCGGAGATTTGCTGTAAAGTGATGGGTGAGAGTGGCGCATCGTCGTCTTCCTGCGAGCCAAGCTCGCGAGTTGCCAGACGTCGGAGAATGGAGATCAGGAGGTGTAAATTTGTTGCCGGAGTTGCTCCGACGGAGACTGAAACTGTTGCGAAGCGACAGAAGCTCGAGGATCGAGCGGCGTCGCTCTCCCGAGACTGTGATAACACGGTTCAGAACTGTGATACAAGAGAAGAAGAAGAGACCGTCGTGAGATTTGTGGCGGAGGAAGTTCCGACGACGGAGATGTCTACAAGACAGACCTTGGATGATTCGACATCTCTGGATCGGGAATCTCCGAGCGTTCCTCTCGGCGGAGAGATTCCGAAGTTCGGATTCTCTTCTGTTTGCGGAAGACGGAGAGATATGGAAGACGCGGTGGCGGTTCATACTTCGCTCTGTTTTACTAACAAGGAAGCTACCGATAAGTTGCACTTATTCGGTGTTTACGACGGTCATGGCTGCTCTCATGTGGCGATGAGGTGTAAGGATCGACTTCACGAGCTCGTGAAAGAGGAGTTTGTAAGAGACGAAAACGATGAAGCCGCCGCGACGGCGGCGGCGGTGGCGTTGGATTGGGACGGTGCTATGAAGAGAATCTTCCAGCGCATGGACAACGAAGTTGTGACGCGAAACAATGAAGAAGTTATGGTTGCGAATTGCAGATGTGAACTGCAGTCGCCGGACTGCGATGCCGTCGGATCTACCGCCGTCGTCGCAATAGTGACGCCGGATAAAATCATCGTCGCTAACTGCGGCGATTCCAGAGCCGTTCTCTGCCGCAACGGAAAGGCCGTTCCTCTCTCCTCCGATCACAAGCCGGACCGGCCCGATGAACTAAAACGGATTGAGGAAGCCGGCGGCCGAGTTATCTACTGGGACGGACCGAGAGTTCTCGGAGTTCTCGCCATGTCAAGAGCCATAGGTAAGAACCAAATCGCCAATCGTTCACAAGTTTTTGCGGCTCTGAAACAGATCAACTAA 1023 53.37 MAEICCKVMGESGASSSSCEPSSRVARRRRMEIRRCKFVAGVAPTETETVAKRQKLEDRAASLSRDCDNTVQNCDTREEEETVVRFVAEEVPTTEMSTRQTLDDSTSLDRESPSVPLGGEIPKFGFSSVCGRRRDMEDAVAVHTSLCFTNKEATDKLHLFGVYDGHGCSHVAMRCKDRLHELVKEEFVRDENDEAAATAAAVALDWDGAMKRIFQRMDNEVVTRNNEEVMVANCRCELQSPDCDAVGSTAVVAIVTPDKIIVANCGDSRAVLCRNGKAVPLSSDHKPDRPDELKRIEEAGGRVIYWDGPRVLGVLAMSRAIGKNQIANRSQVFAALKQIN 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8384997 8387150 - Sed0008974.2 Sed01g1125 700429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1125 340 SMART PP2C_4 113 334 IPR001932 -
Sed01g1125 340 Pfam Protein phosphatase 2C 124 328 IPR001932 -
Sed01g1125 340 ProSiteProfiles PPM-type phosphatase domain profile. 123 340 IPR001932 -
Sed01g1125 340 MobiDBLite consensus disorder prediction 93 114 - -
Sed01g1125 340 MobiDBLite consensus disorder prediction 93 112 - -
Sed01g1125 340 CDD PP2Cc 123 322 IPR001932 -
Sed01g1125 340 Gene3D - 119 335 IPR036457 -
Sed01g1125 340 ProSitePatterns PPM-type phosphatase domain signature. 159 167 IPR000222 GO:0043169(InterPro)
Sed01g1125 340 Coils Coil 53 73 - -
Sed01g1125 340 PANTHER PROTEIN PHOSPHATASE 79 326 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed01g1125 340 SUPERFAMILY PP2C-like 120 326 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1125 Sed-Chr1:8384997 Sed11g2210 Sed-Chr11:35695923 2.10E-62 dispersed
Sed01g1124 Sed-Chr1:8384997 Sed01g1125 Sed-Chr1:8384997 2.10E-184 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1125 K14497 - csv:101206871 456.832