Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1126 ATGGGGGAGGAGGAACTGCCCATTTTGAGTACAAAACATTGGCATGAAGTTATAATGCCAGTAGTTGCTAAGAAGAGGACTGTTTCAATTCCCAATTCCCCAACTCTAAAATGTTGCAGTTCTGGCTGTGCATTTTCCAGATTGGAACACGGTAATTTGGAGTCGTTAAATCGTTCGAAGTCAGCCATGAAGCTCGGCGGATTGATATTGTTTTATGTCGTAGCTATCATTGTAGAGATCATTGGTGGTTTGAGATCCAACAGTCTTGCTGTAATGACTGATGCAGCTCACTTGCTCAGTGATGTTGCTGGTTTTTCTGTTTCCCTCTTTGCTGTTTGGGTTTCGGGCTGGGAGGCAACACCGCAACACTCTTTCGGGTTTAATCGTCTCGAAGTTATAGGTGCCCTTGTGTCTGTTCAGCTCATATGGCTGGTTTCTGGGATATTAATCTACGAGGCTGTCGATCGGATTCTTAGCCAAAAGACAAAGGTGAATGGATTGCTTATGTTTGGCTTTGCAGCTTTTGGTTTCCTGCTCAACTTATTTATGGTTTTGTGGCTTGGCCATAGCCACTCTCATTCTCATTGTTGTCATCATAATCATCGCTTGGATCATGACACTGACCATGAGAAGGAGGAGATATACACAATGACCAAACAAGAGAGTGTTCCTTTGAGGGGATCAATGGACAATGGTTCAAACTTGAACATAAATCTCCAAGGTGCTTATCTTCATGTCATCACTGATATGATTCAATCTATTGGCGTGATGATTGCTGGAGCCACTCTTTGGGTTAAACCCGACTGGGTCATCGTCGATTTAATCTGCACTCTTGTGTTTTCTGTTCTTGCTTTAGCTACTACTTTTTCTATGCTTAAGCATATAGTTGGTATATTGATGGAGGGAACACCCAGAGAGGTCAATATTGAGAGCCTAGAACATGACATCAAAAACATTAAGGGAGTCCAGGCTTTGCATGACTTGCACATTTGGTCGATAACGGTCGGGAAAGTCGTGTTGTCTTGCCATGTTGTAGCCGAACACGGAGTTTGTGGTAGGGAGATTATTTCTAAGATTAGGAACCTCTGTGAAAAGAGATACAATATATTTCATACCACCATACAAGTTGAGTAG 1134 42.5 MGEEELPILSTKHWHEVIMPVVAKKRTVSIPNSPTLKCCSSGCAFSRLEHGNLESLNRSKSAMKLGGLILFYVVAIIVEIIGGLRSNSLAVMTDAAHLLSDVAGFSVSLFAVWVSGWEATPQHSFGFNRLEVIGALVSVQLIWLVSGILIYEAVDRILSQKTKVNGLLMFGFAAFGFLLNLFMVLWLGHSHSHSHCCHHNHRLDHDTDHEKEEIYTMTKQESVPLRGSMDNGSNLNINLQGAYLHVITDMIQSIGVMIAGATLWVKPDWVIVDLICTLVFSVLALATTFSMLKHIVGILMEGTPREVNIESLEHDIKNIKGVQALHDLHIWSITVGKVVLSCHVVAEHGVCGREIISKIRNLCEKRYNIFHTTIQVE 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8399922 8402226 + Sed0003855.1 Sed01g1126 700430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1126 377 NCBIfam cation diffusion facilitator family transporter 69 377 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g1126 377 Gene3D Cation efflux protein transmembrane domain 65 299 IPR027469 -
Sed01g1126 377 Pfam Cation efflux family 69 300 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g1126 377 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 38 377 IPR050681 GO:0005385(PANTHER)|GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0071577(PANTHER)
Sed01g1126 377 SUPERFAMILY Cation efflux protein transmembrane domain-like 65 301 IPR027469 -
Sed01g1126 377 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 306 377 IPR036837 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1126 Sed-Chr1:8399922 Sed01g3770 Sed-Chr1:66855255 1.40E-75 dispersed
Sed01g1126 Sed-Chr1:8399922 Sed13g1429 Sed-Chr13:19546269 8.30E-177 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1126 K14689 - csv:116403740 567.77