Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed01g1153 | ATGGCCAACGACGTCGTTTTCCCCATCCCCTCTTCTTTTTTTCTAATTCTCATTTTCACCTATTTGATTTGGTTTCATTTCCTTGCCCGTAAGCTGACCGGTCCAAGAGTCTGGCCGGTCATAGGCAGCCTACCGGCTCTCATCGCGAACCGGCAGAGATTCCACAACTGGATGGCCGAAAACCTCCGGTCCACAGGCAGCGCCGCCACGTACCAAACCTGTACGGTGGCGCTTCCATTCCTCGCTAGACGACAAGGCTTCTACACCGTCACGTGCCACCCAAGAAACATCGAGCACGTGCTCCGAACCCGGTTCGAAAATTACCCGAAAGGGCCGGACTGGCAGGCGGCTTTTCACGATTTGCTGGGACAGGGGATTTTCAACAGCGATGGAGAGATTTGGCTGATACAGAGGAAGACGGCGGCGCTGGAGTTCACGACGAGGACGCTCCGGTCGGCGATGGACCGGTGGGTGAACCGGACGATAAGGACCCGACTTTGGTGCATTTTGGATAAGGCGGCGGAGTATAAAACGGCGGTGGATTTGCAGGATTTGTTGCTTCGGTTGACTTTTGATAATATTTGTGGGTTGACTTTTGGGAAAGATCCTCAAACTTTGTCGCCTGAATTGCTTGTTAATCCCTTCGCTTTGGCGTTTGACACCGCCACTGAAGCCACTCTTCAGCGCCTTCTTTACCCCGGTCTTTTATGGAGGTTGGGGAAGCTTCTAGGCATCGGAATGGAAAGAAGGTTAAATGAGAGTTTAAAAGTAGTAGAAGATTACATAAACGACGCCGTTGCAACCCGTAAAGAATCTCAAACAGATGATTTATTATCACGCTTCACGAAAAAGAAAGACGACGGCAACGGCGGCAGCCGCTTCTCCGCTGCCGTGCTCCACCGCATCGCTTTAAACTTCGTCCTCGCCGGCCGGGACACCTCCTCCGTGGCACTCACGTGGTTCTTTTGGCTCGTAATGAACCACCCGCACGTGGAAGCTAAAATCCTCGCCGAAATCTCAACGGTCCTCCGCCAGACACGTGGCGAAGATTCGCGCCGTTGGATCGAAGAGCCGTTGGTGTTCGACGAGGCCGACAAATTGGTGTACTTGAAAGCCGCATTGGCCGAAACACTGCGTTTGTACCCGTCCGTACCGCAGGACTTCAAATACGTCGTGGCTGATGACGTGTTGCCAGATGGCACTTTCGTCCCGGCCGGTTCGACCGTGACGTATTCGATTTATTCGGTTGGGAGGATGAAGAGCATTTGGGGAGAGGATTGTGAGGAATTTAAACCGGACCGGTGGTTGTCTTCGACCGGAGACCGGTTTGAGGGGCCGAAGGATGGGTATAAATTTGTGGCGTTTAATGCTGGACCAAGGACTTGTTTGGGGAAGGATTTGGCTTATTTGCAAATGAAGTCCGTGGCCTCCGCCGTGCTCCTCCGGTACCGGTTGGCGCCGGTTCCCGGTCACCGGGTGGAACAAAAAATGTCTCTTACTCTTTTCATGAAGAATGGGCTTCGGGTTTATTTGCACCCTCGCCGGCTCGGCTAG | 1554 | 53.22 | MANDVVFPIPSSFFLILIFTYLIWFHFLARKLTGPRVWPVIGSLPALIANRQRFHNWMAENLRSTGSAATYQTCTVALPFLARRQGFYTVTCHPRNIEHVLRTRFENYPKGPDWQAAFHDLLGQGIFNSDGEIWLIQRKTAALEFTTRTLRSAMDRWVNRTIRTRLWCILDKAAEYKTAVDLQDLLLRLTFDNICGLTFGKDPQTLSPELLVNPFALAFDTATEATLQRLLYPGLLWRLGKLLGIGMERRLNESLKVVEDYINDAVATRKESQTDDLLSRFTKKKDDGNGGSRFSAAVLHRIALNFVLAGRDTSSVALTWFFWLVMNHPHVEAKILAEISTVLRQTRGEDSRRWIEEPLVFDEADKLVYLKAALAETLRLYPSVPQDFKYVVADDVLPDGTFVPAGSTVTYSIYSVGRMKSIWGEDCEEFKPDRWLSSTGDRFEGPKDGYKFVAFNAGPRTCLGKDLAYLQMKSVASAVLLRYRLAPVPGHRVEQKMSLTLFMKNGLRVYLHPRRLG | 517 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 8561665 | 8564403 | + | Sed0012331.1 | Sed01g1153 | 700457 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed01g1153 | 517 | Gene3D | Cytochrome P450 | 28 | 516 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g1153 | 517 | Pfam | Cytochrome P450 | 34 | 504 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g1153 | 517 | PANTHER | CYTOCHROME P450 | 22 | 507 | - | - | |
| Sed01g1153 | 517 | SUPERFAMILY | Cytochrome P450 | 24 | 514 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g1153 | 517 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 455 | 464 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed01g1153 | 517 | PRINTS | P450 superfamily signature | 372 | 383 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g1153 | 517 | PRINTS | P450 superfamily signature | 462 | 473 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g1153 | 517 | PRINTS | P450 superfamily signature | 309 | 326 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g1153 | 517 | PRINTS | P450 superfamily signature | 453 | 462 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g1153 | 517 | PRINTS | E-class P450 group I signature | 462 | 485 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g1153 | 517 | PRINTS | E-class P450 group I signature | 298 | 315 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g1153 | 517 | PRINTS | E-class P450 group I signature | 371 | 389 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g1153 | 517 | PRINTS | E-class P450 group I signature | 318 | 344 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g1153 | 517 | PRINTS | E-class P450 group I signature | 452 | 462 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g1153 | 517 | FunFam | Cytochrome P450 | 26 | 516 | - | - | |
| Sed01g1153 | 517 | CDD | CYP86A | 74 | 507 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g1153 | Sed-Chr1:8561665 | Sed05g0770 | Sed-Chr5:6106634 | 9.00E-190 | dispersed | |
| Sed01g1153 | Sed-Chr1:8561665 | Sed04g2239 | Sed-Chr4:36137951 | 1.20E-186 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed01g1153 | K15401 | - | csv:101214516 | 941.028 |