Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1162 ATGGGGCTGAACCAGCCGCTGGTTTTTGGTGATTTGGAGATCAATGGAGGCGGCGACACTGCGGCGGCAGCGAAAGCGGTGAGGTTCGGAATGGTTAGAGATTTGTGGGGGAATTTTCTGACTGTGGTTTTTGGAACGAAGCTGGCTGTGTTTTTTCCGGCCATTCCTTTGGCTTTGGCGGCGGATTTTTATTACTTTGGAAGAACATGGACATTTGGTTTCAGCTTACTTGGACTGGTCCCACTTGCAGAACGTATCAGTTTTCTGACTGAGCAGATTGCGTTCTTCACAGGGCCCACAGTTGGAGGGCTAGTGAATGCAACATGTGGGAATGTGCCAGAGTTGATAATAGCATTGTTTGCTTTGCACCAAAACAAAGTGAATGTCTTGAAATTTTCCCTTTTGGGCTCCATTCTTTCTAACTTGCTTCTAGTCCTTGGCACCTCCCTCCTCTTTGGAGGCTTGTCCAATCTCAACAAGCAACAAACTTTTAACACAAATGCAGCCAATGTGAGCAATGTGATGCTGCTGCTGGGATTGGTATGCCAAATTCTGCCATTGGTGCTGAGATTTGTATCGCCAACATCAGCTAATATCTCAACGGATTTATCAGTGCTTGAGTTGTCAAGAACTTGCAGCATTTTAATGCTCGTAGCTTATATGGCTTATATGTTCTTCCAGTTGAAAACACATCACCAATTTTTTGATCTACCGCAGGAGGAAGAGGATGAAGAAGAAATGGCAATAGTTGGACTTTGGAGCTCATTAGCTTGGTTGGTTGGTATGACCATTGTCATTGCTGTTTTATCACATTATGTTGTGGCAACAATTGAGGATGCATCGAAATCATGGGGAGTTTCAGTGAGCTTTATAAGCATAATTGTGCTACCAATTATGGGCAATGCAGCAGAGCATGCTGGATCAATTATATTTGCTGTCAAGAACAAATTGGACATAACACTTGGGATAACCTTGGGATCAGCAGCCCAAATTTCCTTGCTTGTGGTGCCTTTGACTGTGATAGTTGGATGGTGTATGGGCATCAAAATGGATCTTTATTCTGGATGGAAATTCACATTACATTAA 1086 43.46 MGLNQPLVFGDLEINGGGDTAAAAKAVRFGMVRDLWGNFLTVVFGTKLAVFFPAIPLALAADFYYFGRTWTFGFSLLGLVPLAERISFLTEQIAFFTGPTVGGLVNATCGNVPELIIALFALHQNKVNVLKFSLLGSILSNLLLVLGTSLLFGGLSNLNKQQTFNTNAANVSNVMLLLGLVCQILPLVLRFVSPTSANISTDLSVLELSRTCSILMLVAYMAYMFFQLKTHHQFFDLPQEEEDEEEMAIVGLWSSLAWLVGMTIVIAVLSHYVVATIEDASKSWGVSVSFISIIVLPIMGNAAEHAGSIIFAVKNKLDITLGITLGSAAQISLLVVPLTVIVGWCMGIKMDLYSGWKFTLH 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8643612 8648239 - Sed0002669.1 Sed01g1162 700466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1162 361 Gene3D - 99 240 IPR044880 -
Sed01g1162 361 Gene3D - 242 359 IPR044880 -
Sed01g1162 361 NCBIfam calcium/proton exchanger 54 352 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Sed01g1162 361 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 28 353 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Sed01g1162 361 Pfam Sodium/calcium exchanger protein 255 348 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g1162 361 Pfam Sodium/calcium exchanger protein 69 228 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1162 Sed-Chr1:8643612 Sed03g2497 Sed-Chr3:30291415 1.60E-100 dispersed
Sed01g1162 Sed-Chr1:8643612 Sed06g2276 Sed-Chr6:46282696 2.90E-70 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1162 K07300 - csv:105436053 503.827