Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g1172 | ATGTCAGTTTCCGTCGCGGTTTCGAACTCGCCGGGGTTTTCTCCGTCGTCGGCCCTGTTCTGCAACTTAACGTCGATCATTTCTCCGGCGCCGGAGACTCTGACGCTGACGTTGGCTCATTCGAATTCGCCTTCTTCCCCTTCTTCTTCCCCTTTCCGGATTAGGTTTCTGAAACCCCCTTCTGGGCTTTCCGTTTCTTCTCCCTCGTCGTCGCCGTCCACCGCCGTCTCGAAGAGGAAGAGACCGGCGAGGTTGGATATTCCGTTGACGCCGTTGAGCTTTGGATCTTCGTCGGCGCCGTCGCCCTCGGCGGTGGAGGCCGAGAGAGATGGGTACTCTGTTTATTGCAAGAGAGGGCGGAGGAGAATTTCCATGGAAGATCGCTACTCTGCCACTGTTGATCTTCGTGGAGATTCCAAAGAGGCATTTTTTGGTGTATTTGATGGACATGGAGGTGCAAAGGCTGCAGAATTTGCAGCAAATAATTTGGAGAAAAACGTGTTGAAAGAGCTTGAAACAATGGCTGATTTTGAACAAGCCGTTAAACATGGCTACCTCACCACAGATTCTGATTTCCTCAAGGAGGATCAACGCGGTGGCTCGTGTTGTGTGACAGCCCTGATCAAGGAAGGCAAGCTCCTTGTCTCCAATGCCGGTGACTGCCGTGCCGTTCTCAGCTCCGAGGGTGTCGCCAAGGCCATCACCTCCGACCATCGCCCAACAAGGGATGACGAAAGGGCCCGAATCGAGTCCACGGGTGGATATGTTGATTTGTGCAATGGAGTTTGGAGAGTCCAAGGATCACTAGCTGTAACAAGAGGAATTGGTGATGCTCACCTTAAACAATGGGTGATAGCGGAGCCGGAGACGAGGGCCATACGGATCGAGCCTCGACACGAGTTCTTGATCTTGGCCTCGGACGGATTATGGGAAAAGGTTAGCAATCAAGAAGCAGTGGACATTGCACACCCATTGTGTGTAGGGATTGAGAAGGCAGAGCCATTGAAGGCCTGTAAAAAGCTTGTGGAGCTATCAATTTCAAGGGGCTCAGTTGACGACATTAGTGTAGTACTAATTCAATTGGCTAACTTCATATAA | 1098 | 51.55 | MSVSVAVSNSPGFSPSSALFCNLTSIISPAPETLTLTLAHSNSPSSPSSSPFRIRFLKPPSGLSVSSPSSSPSTAVSKRKRPARLDIPLTPLSFGSSSAPSPSAVEAERDGYSVYCKRGRRRISMEDRYSATVDLRGDSKEAFFGVFDGHGGAKAAEFAANNLEKNVLKELETMADFEQAVKHGYLTTDSDFLKEDQRGGSCCVTALIKEGKLLVSNAGDCRAVLSSEGVAKAITSDHRPTRDDERARIESTGGYVDLCNGVWRVQGSLAVTRGIGDAHLKQWVIAEPETRAIRIEPRHEFLILASDGLWEKVSNQEAVDIAHPLCVGIEKAEPLKACKKLVELSISRGSVDDISVVLIQLANFI | 365 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 8722188 | 8723910 | + | Sed0005874.1 | Sed01g1172 | 700476 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g1172 | 365 | PANTHER | PROTEIN PHOSPHATASE | 104 | 359 | IPR015655 | GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Sed01g1172 | 365 | Pfam | Protein phosphatase 2C | 116 | 354 | IPR001932 | - | |
Sed01g1172 | 365 | SMART | PP2C_SIG_2 | 120 | 361 | IPR001932 | - | |
Sed01g1172 | 365 | SUPERFAMILY | PP2C-like | 111 | 362 | IPR036457 | - | |
Sed01g1172 | 365 | ProSitePatterns | PPM-type phosphatase domain signature. | 143 | 151 | IPR000222 | GO:0043169(InterPro) | |
Sed01g1172 | 365 | Gene3D | - | 112 | 364 | IPR036457 | - | |
Sed01g1172 | 365 | MobiDBLite | consensus disorder prediction | 61 | 82 | - | - | |
Sed01g1172 | 365 | FunFam | probable protein phosphatase 2C 25 | 104 | 364 | - | - | |
Sed01g1172 | 365 | CDD | PP2Cc | 111 | 361 | IPR001932 | - | |
Sed01g1172 | 365 | MobiDBLite | consensus disorder prediction | 62 | 77 | - | - | |
Sed01g1172 | 365 | Coils | Coil | 160 | 180 | - | - | |
Sed01g1172 | 365 | ProSiteProfiles | PPM-type phosphatase domain profile. | 111 | 361 | IPR001932 | - | |
Sed01g1172 | 365 | SMART | PP2C_4 | 102 | 359 | IPR001932 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1172 | Sed-Chr1:8722188 | Sed07g2577 | Sed-Chr7:41354034 | 1.10E-93 | dispersed | |
Sed01g4349 | Sed-Chr1:71467210 | Sed01g1172 | Sed-Chr1:8722188 | 1.40E-19 | dispersed | |
Sed01g4350 | Sed-Chr1:71467210 | Sed01g1172 | Sed-Chr1:8722188 | 1.30E-19 | dispersed | |
Sed01g1172 | Sed-Chr1:8722188 | Sed01g1173 | Sed-Chr1:8722188 | 2.60E-135 | tandem | |
Sed01g1172 | Sed-Chr1:8722188 | Sed13g1480 | Sed-Chr13:19999970 | 1.10E-165 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g1172 | K17506 | - | csv:101207841 | 572.392 |