Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1172 ATGTCAGTTTCCGTCGCGGTTTCGAACTCGCCGGGGTTTTCTCCGTCGTCGGCCCTGTTCTGCAACTTAACGTCGATCATTTCTCCGGCGCCGGAGACTCTGACGCTGACGTTGGCTCATTCGAATTCGCCTTCTTCCCCTTCTTCTTCCCCTTTCCGGATTAGGTTTCTGAAACCCCCTTCTGGGCTTTCCGTTTCTTCTCCCTCGTCGTCGCCGTCCACCGCCGTCTCGAAGAGGAAGAGACCGGCGAGGTTGGATATTCCGTTGACGCCGTTGAGCTTTGGATCTTCGTCGGCGCCGTCGCCCTCGGCGGTGGAGGCCGAGAGAGATGGGTACTCTGTTTATTGCAAGAGAGGGCGGAGGAGAATTTCCATGGAAGATCGCTACTCTGCCACTGTTGATCTTCGTGGAGATTCCAAAGAGGCATTTTTTGGTGTATTTGATGGACATGGAGGTGCAAAGGCTGCAGAATTTGCAGCAAATAATTTGGAGAAAAACGTGTTGAAAGAGCTTGAAACAATGGCTGATTTTGAACAAGCCGTTAAACATGGCTACCTCACCACAGATTCTGATTTCCTCAAGGAGGATCAACGCGGTGGCTCGTGTTGTGTGACAGCCCTGATCAAGGAAGGCAAGCTCCTTGTCTCCAATGCCGGTGACTGCCGTGCCGTTCTCAGCTCCGAGGGTGTCGCCAAGGCCATCACCTCCGACCATCGCCCAACAAGGGATGACGAAAGGGCCCGAATCGAGTCCACGGGTGGATATGTTGATTTGTGCAATGGAGTTTGGAGAGTCCAAGGATCACTAGCTGTAACAAGAGGAATTGGTGATGCTCACCTTAAACAATGGGTGATAGCGGAGCCGGAGACGAGGGCCATACGGATCGAGCCTCGACACGAGTTCTTGATCTTGGCCTCGGACGGATTATGGGAAAAGGTTAGCAATCAAGAAGCAGTGGACATTGCACACCCATTGTGTGTAGGGATTGAGAAGGCAGAGCCATTGAAGGCCTGTAAAAAGCTTGTGGAGCTATCAATTTCAAGGGGCTCAGTTGACGACATTAGTGTAGTACTAATTCAATTGGCTAACTTCATATAA 1098 51.55 MSVSVAVSNSPGFSPSSALFCNLTSIISPAPETLTLTLAHSNSPSSPSSSPFRIRFLKPPSGLSVSSPSSSPSTAVSKRKRPARLDIPLTPLSFGSSSAPSPSAVEAERDGYSVYCKRGRRRISMEDRYSATVDLRGDSKEAFFGVFDGHGGAKAAEFAANNLEKNVLKELETMADFEQAVKHGYLTTDSDFLKEDQRGGSCCVTALIKEGKLLVSNAGDCRAVLSSEGVAKAITSDHRPTRDDERARIESTGGYVDLCNGVWRVQGSLAVTRGIGDAHLKQWVIAEPETRAIRIEPRHEFLILASDGLWEKVSNQEAVDIAHPLCVGIEKAEPLKACKKLVELSISRGSVDDISVVLIQLANFI 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8722188 8723910 + Sed0005874.1 Sed01g1172 700476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1172 365 PANTHER PROTEIN PHOSPHATASE 104 359 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed01g1172 365 Pfam Protein phosphatase 2C 116 354 IPR001932 -
Sed01g1172 365 SMART PP2C_SIG_2 120 361 IPR001932 -
Sed01g1172 365 SUPERFAMILY PP2C-like 111 362 IPR036457 -
Sed01g1172 365 ProSitePatterns PPM-type phosphatase domain signature. 143 151 IPR000222 GO:0043169(InterPro)
Sed01g1172 365 Gene3D - 112 364 IPR036457 -
Sed01g1172 365 MobiDBLite consensus disorder prediction 61 82 - -
Sed01g1172 365 FunFam probable protein phosphatase 2C 25 104 364 - -
Sed01g1172 365 CDD PP2Cc 111 361 IPR001932 -
Sed01g1172 365 MobiDBLite consensus disorder prediction 62 77 - -
Sed01g1172 365 Coils Coil 160 180 - -
Sed01g1172 365 ProSiteProfiles PPM-type phosphatase domain profile. 111 361 IPR001932 -
Sed01g1172 365 SMART PP2C_4 102 359 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1172 Sed-Chr1:8722188 Sed07g2577 Sed-Chr7:41354034 1.10E-93 dispersed
Sed01g4349 Sed-Chr1:71467210 Sed01g1172 Sed-Chr1:8722188 1.40E-19 dispersed
Sed01g4350 Sed-Chr1:71467210 Sed01g1172 Sed-Chr1:8722188 1.30E-19 dispersed
Sed01g1172 Sed-Chr1:8722188 Sed01g1173 Sed-Chr1:8722188 2.60E-135 tandem
Sed01g1172 Sed-Chr1:8722188 Sed13g1480 Sed-Chr13:19999970 1.10E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1172 K17506 - csv:101207841 572.392