Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1173 ATGTCAGTTTCCGTCGCGGTTTCGAACTCGCCGGGGTTTTCTCCGTCGTCGGCCCTGTTCTGCAACTTAACGTCGATCATTTCTCCGGCGCCGGAGACTCTGACGCTGACGTTGGCTCATTCGAATTCGCCTTCTTCCCCTTCTTCTTCCCCTTTCCGGATTAGGTTTCTGAAACCCCCTTCTGGGCTTTCCGTTTCTTCTCCCTCGTCGTCGCCGTCCACCGCCGTCTCGAAGAGGAAGAGACCGGCGAGGTTGGATATTCCGTTGACGCCGTTGAGCTTTGGATCTTCGTCGGCGCCGTCGCCCTCGGCGGTGGAGGCCGAGAGAGATGGGTACTCTGTTTATTGCAAGAGAGGGCGGAGGAGAATTTCCATGGAAGATCGCTACTCTGCCACTGTTGATCTTCGTGGAGATTCCAAAGAGGCATTTTTTGGTGTATTTGATGGACATGGAGGTGCAAAGGCTGCAGAATTTGCAGCAAATAATTTGGAGAAAAACGTGTTGAAAGAGCTTGAAACAATGGCTGATTTTGAACAAGCCGTTAAACATGGCTACCTCACCACAGATTCTGATTTCCTCAAGGAGGATCAACGCGGTGGCTCGTGTTGTGTGACAGCCCTGATCAAGGAAGGCAAGCTCCTTGTCTCCAATGCCGGTGACTGCCGTGCCGTTCTCAGCTCCGAGGGTGTCGCCAAGGCCATCACCTCCGACCATCGCCCAACAAGGGATGACGAAAGGGCCCGAATCGAGTCCACGGTAAGAATTGGAAGATGA 774 53.49 MSVSVAVSNSPGFSPSSALFCNLTSIISPAPETLTLTLAHSNSPSSPSSSPFRIRFLKPPSGLSVSSPSSSPSTAVSKRKRPARLDIPLTPLSFGSSSAPSPSAVEAERDGYSVYCKRGRRRISMEDRYSATVDLRGDSKEAFFGVFDGHGGAKAAEFAANNLEKNVLKELETMADFEQAVKHGYLTTDSDFLKEDQRGGSCCVTALIKEGKLLVSNAGDCRAVLSSEGVAKAITSDHRPTRDDERARIESTVRIGR 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8722188 8723910 + Sed0005874.2 Sed01g1173 700477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1173 257 MobiDBLite consensus disorder prediction 61 82 - -
Sed01g1173 257 SUPERFAMILY PP2C-like 111 251 IPR036457 -
Sed01g1173 257 Pfam Protein phosphatase 2C 116 251 IPR001932 -
Sed01g1173 257 CDD PP2Cc 111 250 IPR001932 -
Sed01g1173 257 MobiDBLite consensus disorder prediction 238 257 - -
Sed01g1173 257 SMART PP2C_4 102 256 IPR001932 -
Sed01g1173 257 PANTHER PROTEIN PHOSPHATASE 102 251 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed01g1173 257 ProSitePatterns PPM-type phosphatase domain signature. 143 151 IPR000222 GO:0043169(InterPro)
Sed01g1173 257 MobiDBLite consensus disorder prediction 62 77 - -
Sed01g1173 257 Coils Coil 160 180 - -
Sed01g1173 257 Gene3D - 99 254 IPR036457 -
Sed01g1173 257 ProSiteProfiles PPM-type phosphatase domain profile. 111 257 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1173 Sed-Chr1:8722188 Sed13g1480 Sed-Chr13:19999970 1.90E-103 dispersed
Sed01g1172 Sed-Chr1:8722188 Sed01g1173 Sed-Chr1:8722188 2.60E-135 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1173 K17506 - csv:101207841 356.295