Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1174 ATGGCGAAAACAACTGCGCTTTCATGGACCAGAAGTAACCGTGTGATCGGAAAGGGCTCGTTCGGAACTGTCCGCATCGGAACTGGGAAATCCGACGGCCGGATCTTCGCCGTGAAATCCGTGGAACAGAGTGTTGGATTCGACCGCCAAATTGAGTGTTTAGAGAACGAAATTCGGATTCTCCGATCGCTGAAATCGCCGTACGTGGTGGGATTTCTCGGCGATGATGTTTCCGGCGAGTCTCCAACGATGTTGTTTCGCAATTTGCACATGGAGTATTTGCCAGGGGGCACGGTTGCCGACGACCCCACCGGCGCCGGCGATGAGAAGCTTTTACGGGCGAGGACAAGGTGTATTGTTTTGGCTCTGAGTTATGTTCATTCGAAAGGAATTGTTCATTGTGATGTTAAAGGGCGGAATATATTGATCGGATCGAATCCCAGTTTTGTGAAATTGGCCGATTTCGGCTCTGCAACTGAAATCCCCGGCGCCGCCGCCGGATCAGTGGCGCCACGTGGGAGTCCATTGTGGATGGCGCCGGAGGTGGTTCGAGGAGAATATCAGGGGCCGGAATCGGATGTTTGGTCAATTGGGTGTACGGTCATCGAAATGGTCACCGGAAAACCGGCCTGGGAAGATTTCGGGGCGGATACGGTGAGTCGAATCGGATTTTCCTACGAGATGCCGGAGATTCCGACAGGGTTGTCGGAACTCGGACGGGATTTTCTCGGAAAGTGTCTCCGGCGAGATTCAAGTGAGCGGTGGAGCTGTGATCGGCTGCTGCAACATCCATTTCTGGCGGTGGACTCGCCGGATATCGCCGGCGAGGGTTCTCCCCGGTGCGTGCTCGATTGGGTCAACGGCGACTTTGACGACAACGAAGATGAAGAAATTCTCTTCACCGGTGCCGGAGGCCGGGAAATTGAGATCTCCAGCAAAGGCATAATTCAGAAAATTAGTACAAGCGAATGGCCGGATTGGGAGTCGGACGGTTGGTTTCCGGTGAGAAGTTTCTGCAGTGAAGCGGCGCCGGAGAGCTGTGAAGAAGAAGGGGTGGGGGTAGAATGGGAATATGAGAATTTGAGAGGGGTAAAAGGGGAAATGGAGGGAACAAGTTCGGAATATTCGAAATTTATAAAGGACAATCACGGAAAATTTGGAGCCGAATATTCAAATGCTGGCGGCCAGGAGTTTCCGGAGCGTAATAATTGCTGCGGCGGCTTCGGTGACGGTGGTTTAAGTTTCCGGCGGTGGTGGTCTGAAAGATGTGAAATTACAACAATAACCTCGTGGATATATTTATTTGAATTGATATTATGTTATTATTTTAAAATATTAATGAAACAATTGATGTTATTTGGGAACTACACTTTTTTACTTTTCTTTGGTCTTAAAAATATTTTCCCCAGTCCTCTTAAAAACTATCTACAAATTATCTATAAATCTATCTAG 1452 49.24 MAKTTALSWTRSNRVIGKGSFGTVRIGTGKSDGRIFAVKSVEQSVGFDRQIECLENEIRILRSLKSPYVVGFLGDDVSGESPTMLFRNLHMEYLPGGTVADDPTGAGDEKLLRARTRCIVLALSYVHSKGIVHCDVKGRNILIGSNPSFVKLADFGSATEIPGAAAGSVAPRGSPLWMAPEVVRGEYQGPESDVWSIGCTVIEMVTGKPAWEDFGADTVSRIGFSYEMPEIPTGLSELGRDFLGKCLRRDSSERWSCDRLLQHPFLAVDSPDIAGEGSPRCVLDWVNGDFDDNEDEEILFTGAGGREIEISSKGIIQKISTSEWPDWESDGWFPVRSFCSEAAPESCEEEGVGVEWEYENLRGVKGEMEGTSSEYSKFIKDNHGKFGAEYSNAGGQEFPERNNCCGGFGDGGLSFRRWWSERCEITTITSWIYLFELILCYYFKILMKQLMLFGNYTFLLFFGLKNIFPSPLKNYLQIIYKSI 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8737856 8739385 + Sed0023052.1 Sed01g1174 700478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1174 483 CDD STKc_MAPKKK 8 266 - -
Sed01g1174 483 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1174 483 SMART serkin_6 10 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1174 483 SUPERFAMILY Protein kinase-like (PK-like) 14 270 IPR011009 -
Sed01g1174 483 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524(InterPro)
Sed01g1174 483 Pfam Protein kinase domain 13 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1174 483 Gene3D Transferase(Phosphotransferase) domain 1 3 281 - -
Sed01g1174 483 ProSiteProfiles Protein kinase domain profile. 10 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1174 483 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 267 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1174 Sed-Chr1:8737856 Sed05g2032 Sed-Chr5:33553953 3.00E-54 dispersed
Sed01g1174 Sed-Chr1:8737856 Sed13g1482 Sed-Chr13:20034269 2.50E-162 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78598 PF00069 Pkinase 4.70E-51 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1174 - - - 0.0