Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1178 ATGAACAACCCATCAGAGGAAAATGTTGAAACAGGAGGCATTTCTTCAAAGAAAGTGAAGAATGAGTCCTATAGAAGTGTGCTAATGTTGGCTTACCAAAGTCTAGGAGTGGTTTATGGGGACCTTAGCACCTCTCCTCTCTATGTCTACAAAACCACTTTCTCTGGGAAACTCAGCCTCCATGAGAATGATGAAGAGATTTATGGAGTTCTATCCTTCATCTTCTGGACGTTTACACTCATCGCTCTCTTCAAATACGTGTTCATTGTCATGTCCGCCGACGATAATGGTGAAGGGGGTACCTTTGCACTGTACTCTGTTCTCTGCAGGCATGCTAGATTATGCATTCTACCGAATCAAGAGCCTGTCGATGAAAAGTTATCTGCATATGACATGAAGGGAATCTCGGAGACGAGAACTAGTGCTGCTCTGAAGTCTTTTTTCCACCTGCATCCGTCTTTTCGAAAAGGTTTTTTGGTGTTCGTGCTCTTTGGAACTTCCATGGCTATTGGTGATGGAGTGCTCACTCCTGCAATATCAGTTCTTTCAGCAGTCTCAGGAGTTAAACATAAGATCCCTGGACTCCACGAGAATTATGTTGTTTTGATCTCGTGCGTGATCTTAGTTGGACTGTTCTCCCTTCAGCATTGTGGAACACACAAGGTTGCTTTCATGTTCGCTCCAATCATCACTGCGTGGCTTGTCTGTATTAGCGTTATCGGAATGTATAACATTATCAAGTGGAATTCGAGTATATATCACGCACTCTCTCCGGTTTATATGCTGAAGTTCCTTAGAAGCACAGGCGTGGAAGGTTGGATTTCATTAGGCGGAGTCGTTCTCTCGATAACAGGCGTGGAGGCAATGTTTGCTAATTTAGGCCACTTCTCTTCGCTCTCAATCAAGATTGCCTTCACATTTCTTGTATATCCCTCCTTGATCCTTGCATATCTGGGTGAGGCTGCATTCCTCTCTAAGCACCATGAAGATATTCAGAGAAGCTTCTACAAAGCAATACCTGAAGCGGTGTTTTGGCCGGTGTTCGTTGTGGCGACTTTTGCTTCTGTTGTAGGAAGTCAGGCCGTGATTTCGGCTACGTTTTCCCTCGTTAACCAGTGCTGTGCTCTGAATTGCTTCCCCCATGTGAAAACTTTGCACACTTCAAACCAAATATATGGGCAGATTTATATCCCAGAAGTTAACTGGATGCTAATGTGCCTTTGTTTAGCTGTAACAATTGGTTTGAGAGACACGAACATGATAGGCCATGCATATGGGCTGGCAGTCACCATTGTTATGTTTGTCTCAACTTGCTTGATGGCCCTTGTGATAATCATTGTTTGGAAGCAGAGGTTGATCAGTGCCATGGCGTTTTTCGTGTTTTTCGGGTCGATCGAACTACTTTACATTTCAGCATCAATCAGCAAAGTTCACGAAGGCGGGTGGATTCCCATTGTGCTTTCAATTCTCTTTATGTGTTCAATGTATACGTGGTACTATGGGACAATGAAGAAACAGGAATATGACGATGAGAACAAAGTATCGATGAATCGGATACTTTCTTCAGGGCCTAGCCTCGGCATCGTGCGTGTGCCCGGAATTGGACTCATATACACTAATCTGGTCTCTGGTGTTCCAGCTGTTTTTGGTCACTTTGTAACCACTTTGCCTGCATTTCATCAAGTGCTTGTCTTTGTTTGCATAAAGTATGTTCAAGTTCCCCACGTAGACGAAGAAGACCGTTTGATCATCACGAGGGTGGGGCCGAAAGAATGCAACATGTTTCGGTGCATCGTAAGGTATGGTTATCGGGATTTGCTACAAGAAAACTACAATTTCGAGAATCGGTTGGTGCTTTCTGTAGTGCAATATGTAGAAACAGAACATCACCTTTGGAAACCAATGACACAAGTCTCTAGCGAGTATGAAAGTTCAGAAGAAGAATCTTGTGAACATGAACCACTAGAGGAGGTTTTTACAAGGCCAAATATGTCGCAATCTTCCTACGAATATCAAGCAACGAATACCGCAGTCGACAACGATCCAGCGAAGTCTATATACAACGAGGAAGCGATGCAGATATTGGGAGCTAAAGAATCGGGAATCACGTACATTTTCGGGCATTGCTCGGTCAAGGCTAAGAAATCATCCTCCATTATGAAGAAGTTGGCCATTGATATTGTGTATGCTTTTTTGAGGCAGAATTGCAGAGAGCCTGAGGCTATACTGAATGTGCCTCACACTTCTCTCTTGGAAGTTGGAATGGTATATTATGTATAG 2280 43.55 MNNPSEENVETGGISSKKVKNESYRSVLMLAYQSLGVVYGDLSTSPLYVYKTTFSGKLSLHENDEEIYGVLSFIFWTFTLIALFKYVFIVMSADDNGEGGTFALYSVLCRHARLCILPNQEPVDEKLSAYDMKGISETRTSAALKSFFHLHPSFRKGFLVFVLFGTSMAIGDGVLTPAISVLSAVSGVKHKIPGLHENYVVLISCVILVGLFSLQHCGTHKVAFMFAPIITAWLVCISVIGMYNIIKWNSSIYHALSPVYMLKFLRSTGVEGWISLGGVVLSITGVEAMFANLGHFSSLSIKIAFTFLVYPSLILAYLGEAAFLSKHHEDIQRSFYKAIPEAVFWPVFVVATFASVVGSQAVISATFSLVNQCCALNCFPHVKTLHTSNQIYGQIYIPEVNWMLMCLCLAVTIGLRDTNMIGHAYGLAVTIVMFVSTCLMALVIIIVWKQRLISAMAFFVFFGSIELLYISASISKVHEGGWIPIVLSILFMCSMYTWYYGTMKKQEYDDENKVSMNRILSSGPSLGIVRVPGIGLIYTNLVSGVPAVFGHFVTTLPAFHQVLVFVCIKYVQVPHVDEEDRLIITRVGPKECNMFRCIVRYGYRDLLQENYNFENRLVLSVVQYVETEHHLWKPMTQVSSEYESSEEESCEHEPLEEVFTRPNMSQSSYEYQATNTAVDNDPAKSIYNEEAMQILGAKESGITYIFGHCSVKAKKSSSIMKKLAIDIVYAFLRQNCREPEAILNVPHTSLLEVGMVYYV 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8763586 8769301 + Sed0015648.1 Sed01g1178 700482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1178 759 Pfam K+ potassium transporter integral membrane domain 30 521 IPR053951 -
Sed01g1178 759 NCBIfam potassium uptake protein 30 759 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Sed01g1178 759 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 18 759 IPR003855 GO:0006813(PANTHER)|GO:0015079(PANTHER)|GO:0015079(InterPro)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
Sed01g1178 759 Pfam K+ potassium transporter C-terminal domain 532 757 IPR053952 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1178 Sed-Chr1:8763586 Sed06g0390 Sed-Chr6:3448587 1.90E-236 dispersed
Sed01g1178 Sed-Chr1:8763586 Sed01g1179 Sed-Chr1:8763586 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1178 K03549 - csv:101222845 1332.39