Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1179 ATGAAGGGAATCTCGGAGACGAGAACTAGTGCTGCTCTGAAGTCTTTTTTCCACCTGCATCCGTCTTTTCGAAAAGGTTTTTTGGTGTTCGTGCTCTTTGGAACTTCCATGGCTATTGGTGATGGAGTGCTCACTCCTGCAATATCAGTTCTTTCAGCAGTCTCAGGAGTTAAACATAAGATCCCTGGACTCCACGAGAATTATGTTGTTTTGATCTCGTGCGTGATCTTAGTTGGACTGTTCTCCCTTCAGCATTGTGGAACACACAAGGTTGCTTTCATGTTCGCTCCAATCATCACTGCGTGGCTTGTCTGTATTAGCGTTATCGGAATGTATAACATTATCAAGTGGAATTCGAGTATATATCACGCACTCTCTCCGGTTTATATGCTGAAGTTCCTTAGAAGCACAGGCGTGGAAGGTTGGATTTCATTAGGCGGAGTCGTTCTCTCGATAACAGGCGTGGAGGCAATGTTTGCTAATTTAGGCCACTTCTCTTCGCTCTCAATCAAGATTGCCTTCACATTTCTTGTATATCCCTCCTTGATCCTTGCATATCTGGGTGAGGCTGCATTCCTCTCTAAGCACCATGAAGATATTCAGAGAAGCTTCTACAAAGCAATACCTGAAGCGGTGTTTTGGCCGGTGTTCGTTGTGGCGACTTTTGCTTCTGTTGTAGGAAGTCAGGCCGTGATTTCGGCTACGTTTTCCCTCGTTAACCAGTGCTGTGCTCTGAATTGCTTCCCCCATGTGAAAACTTTGCACACTTCAAACCAAATATATGGGCAGATTTATATCCCAGAAGTTAACTGGATGCTAATGTGCCTTTGTTTAGCTGTAACAATTGGTTTGAGAGACACGAACATGATAGGCCATGCATATGGGCTGGCAGTCACCATTGTTATGTTTGTCTCAACTTGCTTGATGGCCCTTGTGATAATCATTGTTTGGAAGCAGAGGTTGATCAGTGCCATGGCGTTTTTCGTGTTTTTCGGGTCGATCGAACTACTTTACATTTCAGCATCAATCAGCAAAGTTCACGAAGGCGGGTGGATTCCCATTGTGCTTTCAATTCTCTTTATGTGTTCAATGTATACGTGGTACTATGGGACAATGAAGAAACAGGAATATGACGATGAGAACAAAGTATCGATGAATCGGATACTTTCTTCAGGGCCTAGCCTCGGCATCGTGCGTGTGCCCGGAATTGGACTCATATACACTAATCTGGTCTCTGGTGTTCCAGCTGTTTTTGGTCACTTTGTAACCACTTTGCCTGCATTTCATCAAGTGCTTGTCTTTGTTTGCATAAAGTATGTTCAAGTTCCCCACGTAGACGAAGAAGACCGTTTGATCATCACGAGGGTGGGGCCGAAAGAATGCAACATGTTTCGGTGCATCGTAAGGTATGGTTATCGGGATTTGCTACAAGAAAACTACAATTTCGAGAATCGGTTGGTGCTTTCTGTAGTGCAATATGTAGAAACAGAACATCACCTTTGGAAACCAATGACACAAGTCTCTAGCGAGTATGAAAGTTCAGAAGAAGAATCTTGTGAACATGAACCACTAGAGGAGGTTTTTACAAGGCCAAATATGTCGCAATCTTCCTACGAATATCAAGCAACGAATACCGCAGTCGACAACGATCCAGCGAAGTCTATATACAACGAGGAAGCGATGCAGATATTGGGAGCTAAAGAATCGGGAATCACGTACATTTTCGGGCATTGCTCGGTCAAGGCTAAGAAATCATCCTCCATTATGAAGAAGTTGGCCATTGATATTGTGTATGCTTTTTTGAGGCAGAATTGCAGAGAGCCTGAGGCTATACTGAATGTGCCTCACACTTCTCTCTTGGAAGTTGGAATGGTATATTATGTATAG 1887 43.67 MKGISETRTSAALKSFFHLHPSFRKGFLVFVLFGTSMAIGDGVLTPAISVLSAVSGVKHKIPGLHENYVVLISCVILVGLFSLQHCGTHKVAFMFAPIITAWLVCISVIGMYNIIKWNSSIYHALSPVYMLKFLRSTGVEGWISLGGVVLSITGVEAMFANLGHFSSLSIKIAFTFLVYPSLILAYLGEAAFLSKHHEDIQRSFYKAIPEAVFWPVFVVATFASVVGSQAVISATFSLVNQCCALNCFPHVKTLHTSNQIYGQIYIPEVNWMLMCLCLAVTIGLRDTNMIGHAYGLAVTIVMFVSTCLMALVIIIVWKQRLISAMAFFVFFGSIELLYISASISKVHEGGWIPIVLSILFMCSMYTWYYGTMKKQEYDDENKVSMNRILSSGPSLGIVRVPGIGLIYTNLVSGVPAVFGHFVTTLPAFHQVLVFVCIKYVQVPHVDEEDRLIITRVGPKECNMFRCIVRYGYRDLLQENYNFENRLVLSVVQYVETEHHLWKPMTQVSSEYESSEEESCEHEPLEEVFTRPNMSQSSYEYQATNTAVDNDPAKSIYNEEAMQILGAKESGITYIFGHCSVKAKKSSSIMKKLAIDIVYAFLRQNCREPEAILNVPHTSLLEVGMVYYV 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8763586 8769301 + Sed0015648.2 Sed01g1179 700483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1179 628 NCBIfam potassium uptake protein 6 628 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Sed01g1179 628 Pfam K+ potassium transporter integral membrane domain 24 390 IPR053951 -
Sed01g1179 628 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 6 628 IPR003855 GO:0006813(PANTHER)|GO:0015079(PANTHER)|GO:0015079(InterPro)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
Sed01g1179 628 Pfam K+ potassium transporter C-terminal domain 401 626 IPR053952 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1179 Sed-Chr1:8763586 Sed06g0390 Sed-Chr6:3448587 5.80E-191 dispersed
Sed01g1178 Sed-Chr1:8763586 Sed01g1179 Sed-Chr1:8763586 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1179 K03549 - csv:101222845 1086.25