Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1192 ATGTCTGGTATGTACGAGCAAGGAGGAGACGCTGCTCCTTATGGCGGCGGTGGAGGTGGTTATGGCGGCGGAGGCCGAGGCGGCGGCGGCGGTGGTGGTAGAGGTTATGGAGGACGAGGCGGCGGAAGCTACGGTGGCCGAGGAGGCGGCGGTGGCGGTGGTGGTTATCAAGGAGGAGATCGTGGAGGGCGAGGTGGTGGGCGTGGCGGCGGGGGTGGAGGTGGTCGTGGCGGAAGCGGTAGAGATGGAGATTGGGTCTGCCCTAATCCTGGCTGTGGGAATTTGAACTTTGCTAGAAGGTCGGAGTGTAACAAGTGCAGTACACCAGCACCGGGGGGTGCTAGCGATCGAAGTGGGGGCGGTGGTGGTTATAATAGAGGTGGAGCTGATGGGGGCTATGGTGGTAATCGTAATGGCAGAGGTGGTAGTTTCCATGGTGGTCGAAGTGGAACTCATGATGGAGGACGGAATGAAGGAGGAAACAGAGGTGGTAATTCTTATGGTGGTCATCATGGAGGGGAAGATAGCGGGTATGGTCAGGTTCCCCCATCATCAGCACCTCAGTCTGGTGGTATTGGTGGTGGCTCTTATCCACCATCGTACCATGGCGTAAATGCAGATTATGGAACAGATGCAGTTCCTCCACCTACAAGCTACAGTGGAACTACATACCCTCCGACTTATGGTGGTCCCACTGGTGGCTATGGTGGTGATAGTCTAGGTGATGGGGGGAGTCGTGGTGGACCATCAGCTGGATATGATGGTGGCTATAATGCGGGTGGTAGGGGTGGTGGCTATAATGCGGGTGGAAGAGGAGGAGGAGGCTATAATGCCAGTGGTGGTAGAGGAGGAGGAGGCTATAATGCCGGCGGGGGTAGAGGGGGTGGTTACGGAAGTACACCTGCAGTAGACCCAGCAGAGGTGAAACAGTGCGATGGAAATTGTGATGATTCGTGTGATAACTCAAGAATCTATGTCTCTAATTTGCCACTAGATGTGACCGTTGATGAATTGAAAGAACTATTTTGTGGCATTGGTCAAATTGGAAGAATCAAGCAGAAGAGGGGTTACAAGGATCAGTGGCCTTGGAACATAAAAATATATACCGATGATATGGGAAATAACAAAGGCGATGCATGTGTATCATATGAAGATCCCTCAGCGGCACATGCTGCTGGCAGTTTCTATAGTGATTATGATTTGAGAGGCCATAAGATTAATATTGCAATGGCTGCCAAGTCTGCACCGAGGGCTCCACCTACACACAACCATGGTGGCGGTGGTAGGGGTGGATATGGAGGTGGTGGTGGAGATAGGCGTAGAGATAGCTATAGGGACGGAGGCTCTGGACCCGACAGACATCAACATGGTGGAAATCGTTCTCGTCCTTACTGA 1395 53.12 MSGMYEQGGDAAPYGGGGGGYGGGGRGGGGGGGRGYGGRGGGSYGGRGGGGGGGGYQGGDRGGRGGGRGGGGGGGRGGSGRDGDWVCPNPGCGNLNFARRSECNKCSTPAPGGASDRSGGGGGYNRGGADGGYGGNRNGRGGSFHGGRSGTHDGGRNEGGNRGGNSYGGHHGGEDSGYGQVPPSSAPQSGGIGGGSYPPSYHGVNADYGTDAVPPPTSYSGTTYPPTYGGPTGGYGGDSLGDGGSRGGPSAGYDGGYNAGGRGGGYNAGGRGGGGYNASGGRGGGGYNAGGGRGGGYGSTPAVDPAEVKQCDGNCDDSCDNSRIYVSNLPLDVTVDELKELFCGIGQIGRIKQKRGYKDQWPWNIKIYTDDMGNNKGDACVSYEDPSAAHAAGSFYSDYDLRGHKINIAMAAKSAPRAPPTHNHGGGGRGGYGGGGGDRRRDSYRDGGSGPDRHQHGGNRSRPY 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8872501 8877494 + Sed0021639.4 Sed01g1192 700496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1192 464 MobiDBLite consensus disorder prediction 1 85 - -
Sed01g1192 464 SMART zf_4 83 109 IPR001876 -
Sed01g1192 464 Gene3D - 79 113 - -
Sed01g1192 464 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 41 464 - -
Sed01g1192 464 SMART rrm1_1 323 409 IPR000504 GO:0003723(InterPro)
Sed01g1192 464 Gene3D - 308 457 IPR012677 -
Sed01g1192 464 ProSitePatterns Zinc finger RanBP2-type signature. 85 106 IPR001876 -
Sed01g1192 464 MobiDBLite consensus disorder prediction 414 464 - -
Sed01g1192 464 ProSiteProfiles Zinc finger RanBP2 type profile. 81 112 IPR001876 -
Sed01g1192 464 SUPERFAMILY Ran binding protein zinc finger-like 74 113 IPR036443 -
Sed01g1192 464 SUPERFAMILY RNA-binding domain, RBD 320 442 IPR035979 GO:0003676(InterPro)
Sed01g1192 464 Pfam Zn-finger in Ran binding protein and others 81 112 IPR001876 -
Sed01g1192 464 Pfam RNA recognition motif 324 354 IPR000504 GO:0003723(InterPro)
Sed01g1192 464 MobiDBLite consensus disorder prediction 435 464 - -
Sed01g1192 464 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 322 413 IPR000504 GO:0003723(InterPro)
Sed01g1192 464 MobiDBLite consensus disorder prediction 105 248 - -
Sed01g1192 464 FunFam TATA-binding protein-associated factor 2N isoform X1 79 113 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1192 K13098 - - csv:101204016 400.979
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1190 Sed-Chr1:8872501 Sed01g1192 Sed-Chr1:8872501 9.30E-170 dispersed
Sed01g1192 Sed-Chr1:8872501 Sed13g1502 Sed-Chr13:20220184 5.50E-122 dispersed
Sed01g1191 Sed-Chr1:8872501 Sed01g1192 Sed-Chr1:8872501 9.30E-170 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1257 . . . . . Bpe10g00764 . Bma15g00258 Cmo04g01938 . . Cma18g00689 . Car18g00639 Sed01g1192 Cpe09g00596 Cpe01g01622 Bhi07g01933 Tan04g0039 Cmetu04g2908 Lac13g0044 Hepe10g1508 . . . . . . . . . . . . . Lsi04g00689 . . Cme10g00672 . . . . . . . . . . . Cma04g01842 . Car04g01847 . . . . . . . . . . Cla11g01331 Cam11g1390 Cec11g1412 Cco11g1408 Clacu11g1548 Cmu11g1369 Cre11g1787 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004242 2 1 2 2 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 0 0 40