Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1201 ATGGTTGACAACGGCGAGGAGAAGCTGCTGGCTATGGCGCGCCACATCGCCAAGACCATGGGCCGCAACGAGTCCATGGCCGATGATATTCTCCAGATTTTTTCCAATTTCGATGCTAGGTTTTCCCTCGACAAGCTGTCTGATAAAGCCGATGAGGCCGATCTCAGAACCTCCGCCTCTTTGCAGCGCTCTCTCAAGTCTCTGGACCGCCGGATCTCGCAGTACGTGGCCGTCGACCACCCGATTTGGGCGGATTCCGCCGATTCCTCTGCTTTTCTTGAAGCTGTCGATGAGTTAATGGCTATTGTTAGGGATTGGACTCCCATGGCTAGGGATAAGTCTGTTGCCCTCTACCTCGCCCGCGCCGAAGAACTGATGCAGCAGGCGATGTTCCGTATCGTCGACGAGTTCCGGTCGTTGATGGAGCGTGGAGGCGAGTCGTTCGAACTGACTCGCCATTTCAGGAACGGTGAGTCAACGGGCGAGTTTTGCTTCGAATCTGAGGAAGATGAGGAAGGTACGGACGGAATTCTTGGCGATAATCTTCAGATCCCGGTGGCGCAGCCGGTGACGGACTACAACATCGTGATCGACGCGCTTCCGTCGGGAACTATCAGCGATCTCCATGAGATTGCGAAGCGGATGGTGGCGGCTGGGTTCGAGAAGGAGTGTTCGCACGCTTACAGTGGCTGCAGGAGAGAGTTCTTGGAGGAGAGCCTTTCTAGGTTAGGGTTACAGAAGCTGAGCATCGATGAAGTTCAGAAGATGCGATGGCTAGACATGGAAGAAGAGATTGAGCGCTGGATGAAGGCGATTACCGTCTCCCTTCGAATCCTCTTCCCTAGCGAACGACGCCTCTGCGAGCGAGTCTTCGTCGGCCTCGCCTCCACCGCCGATCTCTCTTTCATGGAGGTCTGTCGCGGATCGACGATTCAGCTACTGAATTTCGCAGACGCCGTTGCCATTGGCTCGCGAGCGCCGGAACGATTGTTCAAAATCCTCGACATGTTCGAGACCTTGAGAGACCTGATGCCGGATTTCGATTCTGTATTTTCCGATCAGTACTGCCTGTTACTCAGAAATGAAGCAATTACGATCTGGAAAAGGTTTGGCGGAACAATCAAGGGGATCTTCATGGAGCTCGAGAATTTGATCCGTCGCGATCCGGCGAAAACTCCGGTTCCAGGAGGCGACCTTCATCCAATTACTCGATATGTGATGAATTACCTCAAAGCAGCCTGCAAATCACGGCAGACATTGGAGCAAGTTTTCGAAGAAGCTGCTCTTACTTCTAAGGATTACACCAAGCTTGAAGACAGAGCAGCTTCATCGTCGTTATCGGTTCAAATGGACTGGATTATGGAGCTTTTAGAGAGCAATTTAGAGGCAAAATCGAAGATATACAAGGATCTTTCCTTAAGCTCTGTGTTTCTGATGAACAATGGCAGATACATTGTTCAGAAAGTGAAAGACAGTGAGTTAGGATCAGTTTTAGGCGACGATTGGATCCGAAAGCACTCGGTTAAGAACCGGCAGTACCTCGGGAACTACCTGAAAAGCTCATGGAGCAAGGTGGTCGGAGTGTTGAAAATGGACAGTGGCTCTTTAGCTCCGGCAGTAATGAAGGAGAAGCTCAAATCATTCAATATGCAATTCGAAGAAATCTGCCAAATCCAATCAACATGGGTGATATTTGAGCATCAGCTTAGAGAAGAAGCAAGAATTTCAGTTGTCAAAATCCTGATCCCGGCGTACCAAAGCTTCATCGGAAGGTACCAGAGTTTGCCGGAGTTGGCAAAGCATACGGACCGGTATTTGAGGTACACGGCGGAGGATGTAGAGGCGCAGATCACGGAGCTGTTCTCGGGCAGCGGCTCCGGCGGCGGAAGGAGGTAA 1896 51.27 MVDNGEEKLLAMARHIAKTMGRNESMADDILQIFSNFDARFSLDKLSDKADEADLRTSASLQRSLKSLDRRISQYVAVDHPIWADSADSSAFLEAVDELMAIVRDWTPMARDKSVALYLARAEELMQQAMFRIVDEFRSLMERGGESFELTRHFRNGESTGEFCFESEEDEEGTDGILGDNLQIPVAQPVTDYNIVIDALPSGTISDLHEIAKRMVAAGFEKECSHAYSGCRREFLEESLSRLGLQKLSIDEVQKMRWLDMEEEIERWMKAITVSLRILFPSERRLCERVFVGLASTADLSFMEVCRGSTIQLLNFADAVAIGSRAPERLFKILDMFETLRDLMPDFDSVFSDQYCLLLRNEAITIWKRFGGTIKGIFMELENLIRRDPAKTPVPGGDLHPITRYVMNYLKAACKSRQTLEQVFEEAALTSKDYTKLEDRAASSSLSVQMDWIMELLESNLEAKSKIYKDLSLSSVFLMNNGRYIVQKVKDSELGSVLGDDWIRKHSVKNRQYLGNYLKSSWSKVVGVLKMDSGSLAPAVMKEKLKSFNMQFEEICQIQSTWVIFEHQLREEARISVVKILIPAYQSFIGRYQSLPELAKHTDRYLRYTAEDVEAQITELFSGSGSGGGRR 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8974012 8976480 + Sed0018712.1 Sed01g1201 700505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1201 631 PANTHER EXOCYST COMPLEX PROTEIN EXO70 56 624 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Sed01g1201 631 Gene3D Exocyst complex component Exo70 82 630 - -
Sed01g1201 631 FunFam Exocyst subunit Exo70 family protein 76 628 - -
Sed01g1201 631 Pfam Exocyst complex component Exo70 N-terminal 66 142 - -
Sed01g1201 631 Pfam Exo70 exocyst complex subunit C-terminal 267 619 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Sed01g1201 631 SUPERFAMILY Cullin repeat-like 83 621 IPR016159 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1201 Sed-Chr1:8974012 Sed01g1563 Sed-Chr1:11366071 1.20E-108 dispersed
Sed01g1201 Sed-Chr1:8974012 Sed08g2438 Sed-Chr8:37407388 5.60E-109 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1201 K07195 - csv:101204511 1095.49