Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed01g1204 | ATGGGTTCCTCTTCCGGGAGCTTAGACACCTCTGCCAACTCCCACCCTTCTTTCTCCTTCTCCACTCACCCTTTCATGTCTTCCTCCTACTCCGACCTCCTCGCCGCCGCCGCCTCCTCCGACGCCGCCCCTTACCGGAGCTCCGGCACCGGCGTCCCCAAGTTCAAGTCCCTCCCTCCCCCCTCCCTTCCCCTCTCCCCGCCTCCCCTCTCCCCCTCCTCCTTCTTCGCCATTCCTCCCGGCCTGAGCCCCGCCGAGCTCCTCGACTCCCCCGTCTTCCTCTCTTCTTCTCATCTTCTGCCGTCGCCGACCACCGGGAGTTTCCCGTCGCAGCCGTTGAATTGGAAGGGAAATTCTGGGTTTAATCAGCAGAGCGTCAAAGAAGAGAATAAATACCTTTCCCACTTCTCCTTCCAAACTCAATCGTCTAAGCCGCCGCCGACATCATTTCAGCCTTCCTCCGCCGTCGCTCCGATGACTCAGGGATGGAGTTTTCAAGAACAGGGAAAGAAGCAGGACGCATTTTCATCCGAGAAGAACGCGGTGAAGCCGGAGTTCGGATCGATGCAGAGCTTCTCGCCGGAATACGGGATTGTTCAAAACCAGAGCAGAGATTTGCCGTCCGATTACAACAACAATTACCCCCAGCAATCTCAGACGGCAAATCGGAGATCCGACGACGGATATAACTGGAGAAAATACGGGCAAAAACAGGTGAAAGGTAGCGAAAATCCAAGAAGCTATTACAAATGCACATTCCCCAATTGCCCAACGAAGAAAAAGGTTGAAAGATCGTTAGACGGACAGATCACAGAGATTGTTTACAAAGGCAGCCATAACCATCCGAAGCCTCAATCCACAAGGAGGTCGTCGTTGTCGTCCGGCGGTTCTAATCCCGCCGGCAACGACATATCGGACCATTCATTTACAACTCAAGGAAGCGGGCAATTTGACGGTGGCGTTGCGACACCGGAGCATTCTTCGATCTCGATCGGGGACGAGGATTTGGATCGGAGCTCGCAGAAGAGCAAATCTGCTGGGGATGATTACGATGAGGATGAACCAGAAGCTAAGAGGTGGCGACGGGAAGGTGATAACAATGAAGGGATTTCGGCCGCCGGTAGCCGGACGGTTAGAGAGCCGAGAGTTGTTGTTCAAACCACCAGCGATATCGACATTCTCGACGACGGTTACCGGTGGAGGAAGTACGGCCAGAAAGTGGTGAAGGGAAACCCAAATCCAAGGAGTTACTACAAATGCACAAACCCAGGATGTCCGGTAAGAAAGCATGTGGAGAGAGCTTCACACGATCTAAGAGCAGTGATCACCACCTACGAAGGCAAGCACAACCACGACGTCCCCCCGGCGCGTGGCAGTGGAAGTCATTCCCTCAGCCGTCCCTTCCCCAACAACGACTCCTCCGCCCCCGCAATCCGCCCATCGACAGTGCCCCATCCGTCGAACAACAACCACAACCTTCTTCACGGGCTGAGGCTGCAGCAATCTTCAGACAACCAAACACCATTCTCACTCGAAATGGTGCCGAGTTCGAACGGGTTTTCATTCCCGGAATTCGGAAACCCAATGGGAATGGGATCCTACATGAACCAAACACAATCCAATGACAATTTGTTCACAAGGGCCAAAGAAGAGCCAAGGGATCATGACATGTTCATCCAATCCCTCCTATGTTGA | 1695 | 53.92 | MGSSSGSLDTSANSHPSFSFSTHPFMSSSYSDLLAAAASSDAAPYRSSGTGVPKFKSLPPPSLPLSPPPLSPSSFFAIPPGLSPAELLDSPVFLSSSHLLPSPTTGSFPSQPLNWKGNSGFNQQSVKEENKYLSHFSFQTQSSKPPPTSFQPSSAVAPMTQGWSFQEQGKKQDAFSSEKNAVKPEFGSMQSFSPEYGIVQNQSRDLPSDYNNNYPQQSQTANRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSLSSGGSNPAGNDISDHSFTTQGSGQFDGGVATPEHSSISIGDEDLDRSSQKSKSAGDDYDEDEPEAKRWRREGDNNEGISAAGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPPARGSGSHSLSRPFPNNDSSAPAIRPSTVPHPSNNNHNLLHGLRLQQSSDNQTPFSLEMVPSSNGFSFPEFGNPMGMGSYMNQTQSNDNLFTRAKEEPRDHDMFIQSLLC | 564 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 8994775 | 8997705 | - | Sed0025056.1 | Sed01g1204 | 700508 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed01g1204 | 564 | MobiDBLite | consensus disorder prediction | 445 | 493 | - | - | |
| Sed01g1204 | 564 | MobiDBLite | consensus disorder prediction | 132 | 375 | - | - | |
| Sed01g1204 | 564 | Gene3D | WRKY domain | 211 | 285 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Sed01g1204 | 564 | MobiDBLite | consensus disorder prediction | 42 | 70 | - | - | |
| Sed01g1204 | 564 | MobiDBLite | consensus disorder prediction | 463 | 493 | - | - | |
| Sed01g1204 | 564 | Pfam | WRKY DNA -binding domain | 226 | 282 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Sed01g1204 | 564 | Pfam | WRKY DNA -binding domain | 395 | 452 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Sed01g1204 | 564 | FunFam | WRKY transcription factor 33 | 381 | 447 | - | - | |
| Sed01g1204 | 564 | ProSiteProfiles | WRKY domain profile. | 220 | 284 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Sed01g1204 | 564 | SMART | WRKY_cls | 394 | 453 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Sed01g1204 | 564 | SMART | WRKY_cls | 225 | 283 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Sed01g1204 | 564 | MobiDBLite | consensus disorder prediction | 183 | 225 | - | - | |
| Sed01g1204 | 564 | MobiDBLite | consensus disorder prediction | 280 | 323 | - | - | |
| Sed01g1204 | 564 | Gene3D | WRKY domain | 381 | 447 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Sed01g1204 | 564 | SUPERFAMILY | WRKY DNA-binding domain | 223 | 284 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Sed01g1204 | 564 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 154 | 484 | IPR044810 | GO:0003700(InterPro) | |
| Sed01g1204 | 564 | FunFam | WRKY transcription factor | 216 | 285 | - | - | |
| Sed01g1204 | 564 | MobiDBLite | consensus disorder prediction | 330 | 366 | - | - | |
| Sed01g1204 | 564 | MobiDBLite | consensus disorder prediction | 132 | 171 | - | - | |
| Sed01g1204 | 564 | ProSiteProfiles | WRKY domain profile. | 389 | 454 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Sed01g1204 | 564 | SUPERFAMILY | WRKY DNA-binding domain | 386 | 454 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g1204 | Sed-Chr1:8994775 | Sed11g2032 | Sed-Chr11:34377014 | 5.60E-68 | dispersed | |
| Sed01g1204 | Sed-Chr1:8994775 | Sed01g1205 | Sed-Chr1:8994775 | 6.60E-295 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 37186 | PF03106 | WRKY | 3.40E-25 | CL0274 | Sed | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed01g1204 | K13424 | - | csv:101207158 | 900.582 |