Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1221 ATGGACTCATTGTGTGCCAAATTGTGGTGTATTTTGGTGTTTGTTTCATTGATAACTGCTCCGAGCTCTGGCAGTTTATCCGCGAACTTTTACGATAGCTCATGCCCCGACCTACTCTCCACCGTTCGACATGAAGTTGTGAAAGCAGTGGACAAAGAGAATCGAATGGGAGCTTCCTTGCTTCGTCTCCATTTTCACGACTGCTTTGGTTGCGATGCGTCGGTGCTTCTTGACGACACGTCGAATTTTACAGGAGAAAAGACTGCATTACCGAATAAAGATTCGTTGAGAGGTTTTGAAGTGATTGACAGTATAAAGACATTGGTGGAGGCGAGCTGCCCTTCTGTTGTTTCTTGTGCTGATATTCTATCCTTGGCAGCCCGTGACTCGGTGGTTGCACTTGGCGGTTCTTCGTGGGTTGTCGAGCTTGGGAGGCGGGACTCCACGAACGCTAGCTTCGATGGAGCAAACAACGACCTTCCTTCTCCCTTCCTCGACCTTCCCGATCTCATATCTGCCTTCTCCAACAAAGGCTTCAACACTAAAGAATTAGTTGCCCTTTCAGGATCTCACACAATAGGGCAAGCCAGGTGCTCAATGTTCCGAGTACGAGCCTATAACGAAACCACCATCGACTCACAGTTTGCAGCTTCTTTAAGGTCCAACTGCTCTTTCTCGGGCGACAACGGCGACAGCAACAACCTTTCCTCTCTCGACGCCGACACCCCGTCTCTTTTCGACAATGCTTATTTCAAAAACTTGATACAAAGCAAAGGCCTTCTTCATTCCGACCAAGCCCTCTTCAACAACGGCTCTGCCGACTCTCAGGTCACCTCTTACTCCGCCGACTCCTCCGCCTTCCTCTCCGACTTCGCTGCTGCCATGGCCAAGATGTCTAACCTCAGCCCCCTCACCGGGACAGCCGGTGAGATCCGTTCCAACTGCAGGAAGGTTAATGGATGA 963 50.26 MDSLCAKLWCILVFVSLITAPSSGSLSANFYDSSCPDLLSTVRHEVVKAVDKENRMGASLLRLHFHDCFGCDASVLLDDTSNFTGEKTALPNKDSLRGFEVIDSIKTLVEASCPSVVSCADILSLAARDSVVALGGSSWVVELGRRDSTNASFDGANNDLPSPFLDLPDLISAFSNKGFNTKELVALSGSHTIGQARCSMFRVRAYNETTIDSQFAASLRSNCSFSGDNGDSNNLSSLDADTPSLFDNAYFKNLIQSKGLLHSDQALFNNGSADSQVTSYSADSSAFLSDFAAAMAKMSNLSPLTGTAGEIRSNCRKVNG 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9105304 9107460 + Sed0023424.1 Sed01g1221 700525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1221 320 FunFam Peroxidase 29 165 - -
Sed01g1221 320 Pfam Peroxidase 42 283 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1221 320 FunFam Peroxidase 161 298 - -
Sed01g1221 320 Gene3D Peroxidase, domain 2 161 298 - -
Sed01g1221 320 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601(InterPro)
Sed01g1221 320 SUPERFAMILY Heme-dependent peroxidases 26 319 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1221 320 CDD secretory_peroxidase 26 318 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed01g1221 320 PANTHER PEROXIDASE 72-RELATED 12 318 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1221 320 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1221 320 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1221 320 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1221 320 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1221 320 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1221 320 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1221 320 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1221 320 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1221 320 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1221 320 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1221 320 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1221 320 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1221 320 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1221 320 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1221 320 ProSiteProfiles Plant heme peroxidase family profile. 25 319 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1221 320 Gene3D - 29 316 - -
Sed01g1221 320 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1221 Sed-Chr1:9105304 Sed04g1504 Sed-Chr4:29922708 5.40E-145 dispersed
Sed01g1221 Sed-Chr1:9105304 Sed01g1222 Sed-Chr1:9111281 9.50E-81 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1221 K00430 - csv:101221157 460.299