Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1222 ATGGCCTCAACTACAAGCTACAAAATGAATATGATAACTATTATTATATTGGGCCTTGTTTTGATGGGGGCTTTTGCCAATATGGCTGCTGCTTCATCTCAACTCTCCACAAAGTTTTACCAAAGGAAGTGCCCTCAGCTCCTCTCCATCGTCAAATCCATCCTTAAATCTCGAATCTCGAACGAACGCCGCATGGGAGCTTCTCTCCTTCGCCTCCACTTCCACGACTGCTTCGTCAATGGGTGTGATGGGTCGGTGCTGCTTGAGGACCGTGGGTCATTCATGGGAGAGCATACTGCACCTCCCAACAACAACTCACTCAGAGGTTTCGACGTAATCGATAAAATTAAATCTAGAGTCGAGAAGCTGTGTCCTGGCGTGGTGTCATGTGCAGACATTTTGACAATCGCTGCTCGTGATTCTGTTGCATTGCTTGGAGGGCCTCATTGGGATGTTAAACTTGGGCGAAGAGACTCGAAAACAGCAAGCTTTTCGGTTGCGAGTAGCGGAGTGCTTCCTTCACCAGACTCCAGTCTCTCCGTTCTAATCTCTAGGTTTAGAGATCAGGGCCTTTCTCCTACTGACTTGGTTGCCCTGTCTGGAGCGCACACGATCGGACTAGCACGATGCGGCACATTCAGAACACGCATACACAGCAAGAGCAACATAGACCCTGCTTTTGCTAGGAAGAGGCAGCAACAGTGTCCGAGAAACCGAAACATAGGCGGCAACAATCTTGCTCCATTCGACATCCAAACGCCCATGCTGTTCGACAACAAATACTTCCACAACCTTGTTCAAAAGAAAGGCTTACTCCACTCTGACCAAGTTCTGTTTTCCGGGGGCGGTGCCACCAGCTCTTTGGTTAAAAAGTACACCGCCGATGATCGCGCCTTCGATCGGGACTTTGTGCGAGCCATGATCAAGATGGGAGACATCCAACCCCTCACTGGCTCCCATGGAGAGATTCGAAAAGTATGTGGAAGGCCCAATTAA 996 49.3 MASTTSYKMNMITIIILGLVLMGAFANMAAASSQLSTKFYQRKCPQLLSIVKSILKSRISNERRMGASLLRLHFHDCFVNGCDGSVLLEDRGSFMGEHTAPPNNNSLRGFDVIDKIKSRVEKLCPGVVSCADILTIAARDSVALLGGPHWDVKLGRRDSKTASFSVASSGVLPSPDSSLSVLISRFRDQGLSPTDLVALSGAHTIGLARCGTFRTRIHSKSNIDPAFARKRQQQCPRNRNIGGNNLAPFDIQTPMLFDNKYFHNLVQKKGLLHSDQVLFSGGGATSSLVKKYTADDRAFDRDFVRAMIKMGDIQPLTGSHGEIRKVCGRPN 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9111281 9113549 + Sed0025665.1 Sed01g1222 700526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1222 331 Gene3D Peroxidase, domain 2 173 310 - -
Sed01g1222 331 ProSiteProfiles Plant heme peroxidase family profile. 34 331 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1222 331 FunFam Peroxidase 38 178 - -
Sed01g1222 331 Gene3D - 38 327 - -
Sed01g1222 331 CDD secretory_peroxidase 34 329 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed01g1222 331 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1222 331 PRINTS Haem peroxidase superfamily signature 66 80 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1222 331 PRINTS Haem peroxidase superfamily signature 128 145 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1222 331 PRINTS Haem peroxidase superfamily signature 146 158 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1222 331 PRINTS Haem peroxidase superfamily signature 195 210 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1222 331 SUPERFAMILY Heme-dependent peroxidases 34 331 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1222 331 ProSitePatterns Peroxidases proximal heme-ligand signature. 195 205 IPR019793 -
Sed01g1222 331 ProSitePatterns Peroxidases active site signature. 66 77 IPR019794 GO:0004601(InterPro)
Sed01g1222 331 PRINTS Plant peroxidase signature 68 88 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1222 331 PRINTS Plant peroxidase signature 248 263 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1222 331 PRINTS Plant peroxidase signature 108 121 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1222 331 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1222 331 PRINTS Plant peroxidase signature 305 318 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1222 331 PRINTS Plant peroxidase signature 44 63 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1222 331 PRINTS Plant peroxidase signature 127 137 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1222 331 PRINTS Plant peroxidase signature 146 161 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1222 331 PRINTS Plant peroxidase signature 194 206 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1222 331 PANTHER PEROXIDASE 72-RELATED 22 329 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1222 331 Pfam Peroxidase 51 295 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1222 331 FunFam Peroxidase 173 310 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1222 Sed-Chr1:9111281 Sed05g3806 Sed-Chr5:45708736 1.70E-117 dispersed
Sed01g1221 Sed-Chr1:9105304 Sed01g1222 Sed-Chr1:9111281 9.50E-81 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1222 K00430 - mdm:103418409 410.609