Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1239 ATGGCGATACCAGAGTCGTCTGAGACTCACCGGACCGTCTCTCGTCGAGCCAATCGTCCGGCGACTCGGCCGCTTCTCGGAGCTAGGGTTCCGCTCAAACGGTTACTGCGCGTAGCATCTGTTGCATGTGGAATTCAATTCGGCTGGGCGTTGCAGCTCTCTCTTCTCACTCCTTACATTCAAGAGCTCGGTATTCCTCATGCTTGGTCGAGTCTCATATGGCTTTGCGGACCGCTTTCTGGCCTCTTCGTCCAGCCGCTCGCTGGCCACATGAGCGATCGATGCACCAGCCGATACGGCCGCCGGAGGCCGTTCATCGTCGCTGGAGCTCTTTCCATAATAATCGCCGCTCTGATCATCGGTCACTCGGCGGACCTTGGTTGGTTGATTGGTGACAGAGGTGATGTTAGGCCTCGTGCGATTGGATTCTTTGTGCTTGGATTTTGGATTCTGGACGTCGCTAACAACTTCTCCCAGGGTCCTTGCAGAGCTCTTCTTGCTGATCTTACCGGTAAGGATCATCGAAGAAATCGAGTGGCAAATGCCTATTTTTCTCTATTTATCGCTATTGGAAATGTTTTTGGATATGTGACTGGATCTTTTAGTGGCTGGTACAAGATTTTGCCGTTTACTCTTACCTCTGCATGTTCTGTCAATTGTGCAAATCTCAAGTCAGCATTCTTGATTGATATCGTGTTCATTGCAATTACAACATATTTGAGTGTATCAGCAGCTCAAGAGTTGCCTCTAGATTCAAGTGATAGGTCGTCCCTTGTTGTGGAAGAAGGTATTGGGCAGTCAAGTAATACTTCAGAAGCATTTCTCTGGGAGTTGTTTCGGACTTTTAGGCACTTCTCCAGGCATATATGGGCAATTTTGCTTGTCACTTCCCTGACATGGATAGCATGGTTTCCATTTATTCTATTTGATACTGATTGGATGGGTAGAGAGATTTATGGTGGCAAGCCTAATGAAGGACAGAGTTATAGCTCTGGAGTCAGAATGGGAGCATTTGGTCTGGTATTTAACTCTGTTGTCCTTGGAATAACTTCATTACTTATGGAAAAGCTGTGCAGAAAGTGGGGTGCTGGTTTCATATGGGGAATCTCAAATATTTTTATGGCTCTATGTTTTATTTCTATCTTGGTTGTTACGTATGTGGCAAACAATATGGGTTATATAGGTCACGATCTCCCACCAAGTAGTATTGTATCGGCTGCATTGATTATCTTTGCTTTTCTTGGCGCCCCTTTGGCAATTACATACAGTGTTCCATATGCCATGATCTCCTTGCATGTTGAATCCTTACAACTTGGTCAAGGTTTGTCTGTGGGTGTCTTGAACTTAGCAATAGTAATTCCACAGGTTGTGGTGTCCCTGGGAAGTGGACCATGGGATCAGCTGTTTGGTGGTGGAAACTCTCCAGCTTTTGCTGTGGCAGCACTTGCAGCCTTTGCAAGTGGACTCGTTGCCATCTTGGCTCTTCCTCAATCTAGTGCTCAGAAGCCCAGAACCTTCACATGA 1524 46.59 MAIPESSETHRTVSRRANRPATRPLLGARVPLKRLLRVASVACGIQFGWALQLSLLTPYIQELGIPHAWSSLIWLCGPLSGLFVQPLAGHMSDRCTSRYGRRRPFIVAGALSIIIAALIIGHSADLGWLIGDRGDVRPRAIGFFVLGFWILDVANNFSQGPCRALLADLTGKDHRRNRVANAYFSLFIAIGNVFGYVTGSFSGWYKILPFTLTSACSVNCANLKSAFLIDIVFIAITTYLSVSAAQELPLDSSDRSSLVVEEGIGQSSNTSEAFLWELFRTFRHFSRHIWAILLVTSLTWIAWFPFILFDTDWMGREIYGGKPNEGQSYSSGVRMGAFGLVFNSVVLGITSLLMEKLCRKWGAGFIWGISNIFMALCFISILVVTYVANNMGYIGHDLPPSSIVSAALIIFAFLGAPLAITYSVPYAMISLHVESLQLGQGLSVGVLNLAIVIPQVVVSLGSGPWDQLFGGGNSPAFAVAALAAFASGLVAILALPQSSAQKPRTFT 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9198091 9206279 - Sed0021940.1 Sed01g1239 700543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1239 507 PANTHER SUGAR TRANSPORTER 29 493 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
Sed01g1239 507 CDD MFS_SLC45_SUC 35 474 - -
Sed01g1239 507 FunFam Sucrose transport protein 29 495 - -
Sed01g1239 507 NCBIfam sucrose/proton symporter 30 499 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
Sed01g1239 507 Pfam Major Facilitator Superfamily 40 451 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Sed01g1239 507 SUPERFAMILY MFS general substrate transporter 35 497 IPR036259 -
Sed01g1239 507 Gene3D MFS general substrate transporter like domains 32 495 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1239 K15378 - - csv:101220384 876.315
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1239 Sed-Chr1:9198091 Sed08g1987 Sed-Chr8:34226962 8.10E-127 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed08g1987 . 12 485 Sucrose Transporter Gene Family AT1G22710 60.5 4.3e-176 615.5
Sed01g1239 . 32 496 Sucrose Transporter Gene Family AT1G22710 51.4 8.5e-140 495.0
Sed08g1987 . 8 480 Sucrose Transporter Gene Family AT2G14670 60.8 5.6e-173 605.1
Sed01g1239 . 31 496 Sucrose Transporter Gene Family AT2G14670 51.2 4.6e-135 479.2
Sed08g1987 . 13 410 Sucrose Transporter Gene Family AT1G66570 58.8 3.0e-144 509.6
Sed11g0820 . 147 602 Sucrose Transporter Gene Family AT2G02860 68.6 4.7e-182 635.2
Sed10g1185 . 150 602 Sucrose Transporter Gene Family AT2G02860 68.7 2.9e-179 625.9
Sed11g0822 . 147 549 Sucrose Transporter Gene Family AT2G02860 67.5 8.2e-158 554.7
Sed11g0821 . 147 517 Sucrose Transporter Gene Family AT2G02860 65.0 5.0e-139 492.3
Sed08g1987 . 15 480 Sucrose Transporter Gene Family AT5G06170 58.5 3.2e-160 562.8
Sed08g1987 . 13 480 Sucrose Transporter Gene Family AT5G43610 60.6 5.8e-170 595.1
Sed01g1239 . 31 496 Sucrose Transporter Gene Family AT5G43610 50.5 6.2e-132 468.8
Sed01g1239 . 1 503 Sucrose Transporter Gene Family AT1G09960 69.3 9.8e-205 710.7
Sed08g1987 . 19 486 Sucrose Transporter Gene Family AT1G09960 51.5 6.1e-130 462.2
Sed08g1987 . 5 486 Sucrose Transporter Gene Family AT1G71880 58.3 3.4e-165 579.3
Sed01g1239 . 31 507 Sucrose Transporter Gene Family AT1G71880 51.2 1.3e-135 481.1
Sed08g1987 . 13 485 Sucrose Transporter Gene Family AT1G71890 57.1 5.1e-161 565.5
Sed08g1987 . 5 486 Sucrose Transporter Gene Family AT1G71880 58.3 3.4e-165 579.3
Sed01g1239 . 31 507 Sucrose Transporter Gene Family AT1G71880 51.2 1.3e-135 481.1
Sed08g1987 . 12 485 Sucrose Transporter Gene Family AT1G22710 60.5 4.3e-176 615.5
Sed01g1239 . 32 496 Sucrose Transporter Gene Family AT1G22710 51.4 8.5e-140 495.0
Sed11g0820 . 147 602 Sucrose Transporter Gene Family AT2G02860 68.6 4.7e-182 635.2
Sed10g1185 . 150 602 Sucrose Transporter Gene Family AT2G02860 68.7 2.9e-179 625.9
Sed11g0822 . 147 549 Sucrose Transporter Gene Family AT2G02860 67.5 8.2e-158 554.7
Sed11g0821 . 147 517 Sucrose Transporter Gene Family AT2G02860 65.0 5.0e-139 492.3
Sed01g1239 . 1 503 Sucrose Transporter Gene Family AT1G09960 69.3 9.8e-205 710.7
Sed08g1987 . 19 486 Sucrose Transporter Gene Family AT1G09960 51.5 6.1e-130 462.2
Sed08g1987 . 13 485 Sucrose Transporter Gene Family AT1G71890 57.1 5.1e-161 565.5
Sed08g1987 . 13 480 Sucrose Transporter Gene Family AT5G43610 60.6 5.8e-170 595.1
Sed01g1239 . 31 496 Sucrose Transporter Gene Family AT5G43610 50.5 6.2e-132 468.8
Sed08g1987 . 13 410 Sucrose Transporter Gene Family AT1G66570 58.8 3.0e-144 509.6
Sed08g1987 . 8 480 Sucrose Transporter Gene Family AT2G14670 60.8 5.6e-173 605.1
Sed01g1239 . 31 496 Sucrose Transporter Gene Family AT2G14670 51.2 4.6e-135 479.2
Sed08g1987 . 15 480 Sucrose Transporter Gene Family AT5G06170 58.5 3.2e-160 562.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010988 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 30