Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1239 ATGGCGATACCAGAGTCGTCTGAGACTCACCGGACCGTCTCTCGTCGAGCCAATCGTCCGGCGACTCGGCCGCTTCTCGGAGCTAGGGTTCCGCTCAAACGGTTACTGCGCGTAGCATCTGTTGCATGTGGAATTCAATTCGGCTGGGCGTTGCAGCTCTCTCTTCTCACTCCTTACATTCAAGAGCTCGGTATTCCTCATGCTTGGTCGAGTCTCATATGGCTTTGCGGACCGCTTTCTGGCCTCTTCGTCCAGCCGCTCGCTGGCCACATGAGCGATCGATGCACCAGCCGATACGGCCGCCGGAGGCCGTTCATCGTCGCTGGAGCTCTTTCCATAATAATCGCCGCTCTGATCATCGGTCACTCGGCGGACCTTGGTTGGTTGATTGGTGACAGAGGTGATGTTAGGCCTCGTGCGATTGGATTCTTTGTGCTTGGATTTTGGATTCTGGACGTCGCTAACAACTTCTCCCAGGGTCCTTGCAGAGCTCTTCTTGCTGATCTTACCGGTAAGGATCATCGAAGAAATCGAGTGGCAAATGCCTATTTTTCTCTATTTATCGCTATTGGAAATGTTTTTGGATATGTGACTGGATCTTTTAGTGGCTGGTACAAGATTTTGCCGTTTACTCTTACCTCTGCATGTTCTGTCAATTGTGCAAATCTCAAGTCAGCATTCTTGATTGATATCGTGTTCATTGCAATTACAACATATTTGAGTGTATCAGCAGCTCAAGAGTTGCCTCTAGATTCAAGTGATAGGTCGTCCCTTGTTGTGGAAGAAGGTATTGGGCAGTCAAGTAATACTTCAGAAGCATTTCTCTGGGAGTTGTTTCGGACTTTTAGGCACTTCTCCAGGCATATATGGGCAATTTTGCTTGTCACTTCCCTGACATGGATAGCATGGTTTCCATTTATTCTATTTGATACTGATTGGATGGGTAGAGAGATTTATGGTGGCAAGCCTAATGAAGGACAGAGTTATAGCTCTGGAGTCAGAATGGGAGCATTTGGTCTGGTATTTAACTCTGTTGTCCTTGGAATAACTTCATTACTTATGGAAAAGCTGTGCAGAAAGTGGGGTGCTGGTTTCATATGGGGAATCTCAAATATTTTTATGGCTCTATGTTTTATTTCTATCTTGGTTGTTACGTATGTGGCAAACAATATGGGTTATATAGGTCACGATCTCCCACCAAGTAGTATTGTATCGGCTGCATTGATTATCTTTGCTTTTCTTGGCGCCCCTTTGGCAATTACATACAGTGTTCCATATGCCATGATCTCCTTGCATGTTGAATCCTTACAACTTGGTCAAGGTTTGTCTGTGGGTGTCTTGAACTTAGCAATAGTAATTCCACAGGTTGTGGTGTCCCTGGGAAGTGGACCATGGGATCAGCTGTTTGGTGGTGGAAACTCTCCAGCTTTTGCTGTGGCAGCACTTGCAGCCTTTGCAAGTGGACTCGTTGCCATCTTGGCTCTTCCTCAATCTAGTGCTCAGAAGCCCAGAACCTTCACATGA 1524 46.59 MAIPESSETHRTVSRRANRPATRPLLGARVPLKRLLRVASVACGIQFGWALQLSLLTPYIQELGIPHAWSSLIWLCGPLSGLFVQPLAGHMSDRCTSRYGRRRPFIVAGALSIIIAALIIGHSADLGWLIGDRGDVRPRAIGFFVLGFWILDVANNFSQGPCRALLADLTGKDHRRNRVANAYFSLFIAIGNVFGYVTGSFSGWYKILPFTLTSACSVNCANLKSAFLIDIVFIAITTYLSVSAAQELPLDSSDRSSLVVEEGIGQSSNTSEAFLWELFRTFRHFSRHIWAILLVTSLTWIAWFPFILFDTDWMGREIYGGKPNEGQSYSSGVRMGAFGLVFNSVVLGITSLLMEKLCRKWGAGFIWGISNIFMALCFISILVVTYVANNMGYIGHDLPPSSIVSAALIIFAFLGAPLAITYSVPYAMISLHVESLQLGQGLSVGVLNLAIVIPQVVVSLGSGPWDQLFGGGNSPAFAVAALAAFASGLVAILALPQSSAQKPRTFT 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9198091 9206279 - Sed0021940.1 Sed01g1239 700543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1239 507 PANTHER SUGAR TRANSPORTER 29 493 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
Sed01g1239 507 CDD MFS_SLC45_SUC 35 474 - -
Sed01g1239 507 FunFam Sucrose transport protein 29 495 - -
Sed01g1239 507 NCBIfam sucrose/proton symporter 30 499 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
Sed01g1239 507 Pfam Major Facilitator Superfamily 40 451 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Sed01g1239 507 SUPERFAMILY MFS general substrate transporter 35 497 IPR036259 -
Sed01g1239 507 Gene3D MFS general substrate transporter like domains 32 495 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1239 Sed-Chr1:9198091 Sed08g1987 Sed-Chr8:34226962 8.10E-127 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1239 K15378 - csv:101220384 876.315