Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1243 ATGCAGTTGTCGGGAAAGGAGTGGCGTCAGATTCTTGAGGAATACAGGCTAACACACCCAGAAGTGACTGTTCTAGATCCTCCAGATGCAATACAGCATTTACACAATCGCCAGTCTATGCTCCAGGCAGTTGCTGACATCGAGTTATCTGAATCCTATGGCAAAGTAGATGTTCCAAAGCAATTAGTCATAAAAAATGACGCATCCTCCATTTCTGATGCCGTGGTGAAGGTCGGGCTAAAACTCCCTCTTGTTGCTAAACCGTTGGTTGCTGATGGAAGTGAGAAGTCCCATCAATTATCTTTAGCTTATGATAAGTACTCCCTCCAAAAGCTTGAGCTTCCTCTTGTTCTTCAGGAGTTTGTCAATCATGGAGGTGTCATGTTTAAGGTTTTCATCGTTGGCGAAGCTATAAAAGTGGTCAGACGTTTTTCTTTACCAAATGTGAGCATGTGGGAGGTCTTGAAAAATGCTGGCATTTATCATTTCCCAAGAGTTTCTCATGCTGCAGCATCTGCCGATGATGCTGATCTGGATCCTTGTGTTGCTGAACTTCCTCCACGACCTCTATTAGAGAGATTAGCAAAGGAACTCAGACGTAGGCTGGGGCTTCGTTTATTCAACCTGGACATTATTCGAGAGTATGGAACTAAAGATCGCTACTATGTCATCGATATCAACTACTTCCCCGGATATGGAAAAATGCCGGAATATGAGCATATATTCACAGACTTTCTGTTGGGCTTGGTGCAGAGCAAGTACAAGAAGAGAATAACTTACTAA 783 43.3 MQLSGKEWRQILEEYRLTHPEVTVLDPPDAIQHLHNRQSMLQAVADIELSESYGKVDVPKQLVIKNDASSISDAVVKVGLKLPLVAKPLVADGSEKSHQLSLAYDKYSLQKLELPLVLQEFVNHGGVMFKVFIVGEAIKVVRRFSLPNVSMWEVLKNAGIYHFPRVSHAAASADDADLDPCVAELPPRPLLERLAKELRRRLGLRLFNLDIIREYGTKDRYYVIDINYFPGYGKMPEYEHIFTDFLLGLVQSKYKKRITY 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9249993 9255208 + Sed0011909.3 Sed01g1243 700547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1243 260 Gene3D - 27 231 - -
Sed01g1243 260 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 27 234 - -
Sed01g1243 260 Pfam Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain 51 247 IPR040464 -
Sed01g1243 260 PIRSF ITPK 1 260 IPR008656 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0032957(InterPro)|GO:0047325(InterPro)|GO:0052725(InterPro)|GO:0052726(InterPro)
Sed01g1243 260 PANTHER INOSITOL-TETRAKISPHOSPHATE 1-KINASE 5 256 IPR008656 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0032957(InterPro)|GO:0047325(InterPro)|GO:0047325(PANTHER)|GO:0052725(InterPro)|GO:0052725(PANTHER)|GO:0052726(InterPro)|GO:0052726(PANTHER)|GO:0052746(PANTHER)
Sed01g1243 260 FunFam Inositol-tetrakisphosphate 1-kinase 4 27 231 - -
Sed01g1243 260 Pfam Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain 3 31 IPR041429 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1243 K00913 - - csv:101206636 451.055
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1241 Sed-Chr1:9249993 Sed01g1243 Sed-Chr1:9249993 4.50E-145 dispersed
Sed01g1243 Sed-Chr1:9249993 Sed03g1445 Sed-Chr3:9285638 3.40E-137 dispersed
Sed01g1242 Sed-Chr1:9249993 Sed01g1243 Sed-Chr1:9249993 1.50E-145 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g583 . . . . . . . . Cmo05g00598 Cmo12g00187 . . . Car12g00213 Sed01g1243 . Cpe07g00196 Bhi04g00887 Tan02g2526 Cmetu03g1186 . . . . Cla08g01196 Cam08g1658 Cec08g1235 Cco08g1354 Clacu08g1355 . Cre08g1142 . . Cone17ag1147 Cone20ag0580 . . . Cme03g01769 Blo17g00078 . . Bda13g01339 . Bpe14g00508 . Bma02g00094 . . . Cma12g00232 Cma05g00573 Car05g00519 . Cpe11g00502 . . . . . . . . . . . . . . . Lsi08g01058 Csa02g02240 Chy03g01276 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003608 3 3 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 4 4 1 47