Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1250 ATGTCAAGAATTTCACTGCCATTTCTTAGAACTCTGCTCTCTGTTTACCTCTTTTACTTCATCTCCTTGCCATTTGGTGCATGTTCACAAACTTTTCATGCAGACCAGGCACTCTTGCTTGAGCTTAAAGAGCAATGGGGGAATCCGCCATCTCTCTGGTTGTGGAACTCCTCGTCCTCGCCCTGTGATTGGCCTGCGATCCTCTGTCGTGACGGCACGGTTACAGGAATCTCTCTTAGAAACAAGAATATCACTGGGGGAATCCCAAGCGTTATATGTGACTTGCAAAGCCTCATTGTGCTTGATCTTTCATGGAACTATATCCCTGGTGGGTTTCCAGAAGTTCTGTACAACTGTTCCAAGCTCAAGTATCTTGATCTTTCAGGAAATTATTTTGTGGGTTCAATACCACACGACATAGATCGACTTCGAACTCTCCAGTACATGGACCTTAGCGCCAACAACTTTTCAGGGGATTTTCCAGCAGCACTAGGACGGTTGCCAGATTTGAGAACTTTGAACATCTATCGAACTCAGTGTAATGGCACATTGGCAGTTGAAATTGGCAACTTGTCCAATCTTGAAATTCTGAGCTTGGCGTATAACACTTTGCTGGTCCCATCGTCAATACCTCGAGAATTCGGGAAACTGAAGAAGCTGAAATATATGTGGATGACAAAATCCAACTTGATTGGTGAAATCCCAGAAAGCTTATCGGATCTTTTGAGCCTTGAACACTTGGATTTATCTAGCAACAACTTGGTAGGCTCTATTCCTGCTGGGTTGTTCTCTTTGCAGAATTTAAGCAACTTATATCTCTACCAAAATCAATTGTCTGGGGAGATACCCAAATCAATCCAAGCATCAAATTTACTCAATGTCGACCTCTCTACAAACAATTTAAGCAGCATAATCCCTGAAGATTTTGGGAAGTTGAAAAGGTTGCAGGTCCTCAACTTGTTTGCAAATCACTTGTATGGTGAGATTCCACACAGTTTAGGCCTCATACCGACGCTGAAGGGCTTTCGTGTTTTCAACAACAGCTTAACCGGGGCGCTGCCACAAGAATTAGGTCTGCATTCAAATCTAGAAGCCTTGGAGGTTTCAATGAATAAATTAAGTGGTTCGTTACCTGAGCATCTCTGCAAAAATGGCGTCTTACAGGGAGTGGTTGCTTTCTCCAACAATCTTAGCGGTGAATTACCTCAAGGGCTTGGCAATTGCAGGACCCTACGTACAGTCCAGCTTTCTAATAACAACTTTTCCGGCGAAATACCTCCAGGTCTTTGGACTACTTTCAACCTATCAAGCATAATGTTAGATGGAAATTCATTCTCAGGAAAGTTACCAGATAGCTTATCTTGGAATCTCTCTAGACTGACAATAAATAACAACAGATTTTGGGGTCGAATTCCTAAAAATGTGTCAGCTTGGCATAACCTGATTGTGTTCGAGGCAAGCAACAATCTTCTTTCTGGAAAATTTCCCAAGGGATTGACAGCCCTTTCTCGTCTTACCATACTTCTATTGAATGGAAATCAACTCTCTGGCCAACTTCCTTCAACAATTGGTTCGTGGGAATCGCTGAATACTCTAAATCTCTCAGGAAATGAACTTTCAGGCCATATTCCAGCAGCGTTCGGTTTTCTTCCTCACCTCCTTTATCTGGATTTATCAGCTAATAATTTCTCAGGTGAAATCCCACCTGAAATTGGCCAGTTAAGACTGGTTTCCCTCAACTTGTCTTCCAATCAGCTTTCAGGGGAAATTCCAGATGCATATGAGAATATAGCATACGAAAGGAGTTTCTTGAACAACCCCAAACTATGTACCACCACTGATGTACTTGACTTTCCAAGCTGTAACTCCAGACAAAGAGATTCAAAAGATAAGTCCTCCAATTATCTTCTCTTCGTTCTAGCCGCCTTCGTCACCTTGCTCATAATTTCTATGCTCTGGATCTTCATCCTATATGGAAGTTATTGCAAAAAAGATGAAAGATGCCACCCTGACACATGGGAGCTAACCAAATTCCAGAAATTGGACTTCACAGAAGCAAATATCTTATCAAACTTGACAGAAACTAACCTGATCGGAAGTGGGGGATCCGGCAAAGTGTACTGCATAGACATCAACCATGCAGGTTATTATGTTGCTGTCAAAAGGATTTGGAGTAACAAAAAGTTAGATCAAAAGCTTGAGAAAGAATTTCAAGCAGAAGTTGGTATACTAGGTTCAATTCGTCATTCAAACATAGTGAAGTTGCTGTGCTGCGTCTGGAATGATAATTCAAAGCTCTTAGTCTATGAATACATGAAAAATCAGAGTCTAGATAAGTGGCTTCATAAAAAGAAGAAAATGTTAAGAGCGGCTACTATGCATTTTGTCGACCAATATGTCTTAAACTGGCCGAGGAGGTTGCAGATTGCAATTGGAGCTGCACAAGGCCTCAGTTACATGCACCATGATTGCTCTCCACCAATCATTCATCGAGATGTTAAGTCGAGCAACATCTTATTAGACAGCGAGTTCCAGGCAAAGGTAGCAGATTTTGGCCTGGCCAAGATGCTGGTCAGGCAGGGAGAGCCTCACACAATGTCTACAATAGCAGGATCTTTTGGCTATATAGCCCCAGAGTATGCTTATACAACGAAAATCAATGAGAAGATTGATGTCTATAGCTTTGGGGTTGTACTCTTGGAACTCACAACAGGAAGAGAGCCTAACTGTGGAGATGAGAACATGAGTCTAGCAGAATGGGCATGGCAGCAATACAGTGAGGGAAATCCTATTACTGATTCTCTTGATGAAGAAATAAAAAACCCATGCAATTTGGAAGAGATGATTACTCTGTTCAAACTTGGTCTAATTTGTACAAGCACGTTACCTGAAATACGACCGTCGATGAAGGAGGTTCTGCATATTCTACGCCAATGCAGCCCTGCAGAAGATTGCGAAAGGAGAAAGAATGCCACTGAATTTGATACTGCTCTTCTCCTTGGCACTCCTCTATGA 3015 42.09 MSRISLPFLRTLLSVYLFYFISLPFGACSQTFHADQALLLELKEQWGNPPSLWLWNSSSSPCDWPAILCRDGTVTGISLRNKNITGGIPSVICDLQSLIVLDLSWNYIPGGFPEVLYNCSKLKYLDLSGNYFVGSIPHDIDRLRTLQYMDLSANNFSGDFPAALGRLPDLRTLNIYRTQCNGTLAVEIGNLSNLEILSLAYNTLLVPSSIPREFGKLKKLKYMWMTKSNLIGEIPESLSDLLSLEHLDLSSNNLVGSIPAGLFSLQNLSNLYLYQNQLSGEIPKSIQASNLLNVDLSTNNLSSIIPEDFGKLKRLQVLNLFANHLYGEIPHSLGLIPTLKGFRVFNNSLTGALPQELGLHSNLEALEVSMNKLSGSLPEHLCKNGVLQGVVAFSNNLSGELPQGLGNCRTLRTVQLSNNNFSGEIPPGLWTTFNLSSIMLDGNSFSGKLPDSLSWNLSRLTINNNRFWGRIPKNVSAWHNLIVFEASNNLLSGKFPKGLTALSRLTILLLNGNQLSGQLPSTIGSWESLNTLNLSGNELSGHIPAAFGFLPHLLYLDLSANNFSGEIPPEIGQLRLVSLNLSSNQLSGEIPDAYENIAYERSFLNNPKLCTTTDVLDFPSCNSRQRDSKDKSSNYLLFVLAAFVTLLIISMLWIFILYGSYCKKDERCHPDTWELTKFQKLDFTEANILSNLTETNLIGSGGSGKVYCIDINHAGYYVAVKRIWSNKKLDQKLEKEFQAEVGILGSIRHSNIVKLLCCVWNDNSKLLVYEYMKNQSLDKWLHKKKKMLRAATMHFVDQYVLNWPRRLQIAIGAAQGLSYMHHDCSPPIIHRDVKSSNILLDSEFQAKVADFGLAKMLVRQGEPHTMSTIAGSFGYIAPEYAYTTKINEKIDVYSFGVVLLELTTGREPNCGDENMSLAEWAWQQYSEGNPITDSLDEEIKNPCNLEEMITLFKLGLICTSTLPEIRPSMKEVLHILRQCSPAEDCERRKNATEFDTALLLGTPL 1004
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9305135 9308711 - Sed0006304.1 Sed01g1250 700554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1250 1004 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 286 381 - -
Sed01g1250 1004 CDD STKc_IRAK 698 976 - -
Sed01g1250 1004 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 32 188 - -
Sed01g1250 1004 ProSiteProfiles Protein kinase domain profile. 692 977 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1250 1004 Pfam Leucine rich repeat 528 586 IPR001611 GO:0005515(InterPro)
Sed01g1250 1004 ProSitePatterns Serine/Threonine protein kinases active-site signature. 828 840 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1250 1004 Gene3D Transferase(Phosphotransferase) domain 1 772 998 - -
Sed01g1250 1004 FunFam Kinase family with leucine-rich repeat domain-containing protein 772 993 - -
Sed01g1250 1004 ProSitePatterns Protein kinases ATP-binding region signature. 698 721 IPR017441 GO:0005524(InterPro)
Sed01g1250 1004 ProSiteProfiles Leucine-rich repeat profile. 243 266 IPR001611 GO:0005515(InterPro)
Sed01g1250 1004 Pfam Protein kinase domain 694 974 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1250 1004 SMART LRR_typ_2 550 574 IPR003591 -
Sed01g1250 1004 SMART LRR_typ_2 191 217 IPR003591 -
Sed01g1250 1004 SMART LRR_typ_2 502 526 IPR003591 -
Sed01g1250 1004 SMART LRR_typ_2 241 265 IPR003591 -
Sed01g1250 1004 SMART LRR_typ_2 312 336 IPR003591 -
Sed01g1250 1004 SMART LRR_typ_2 95 119 IPR003591 -
Sed01g1250 1004 Pfam Leucine Rich Repeat 504 525 IPR001611 GO:0005515(InterPro)
Sed01g1250 1004 Pfam Leucine Rich Repeat 290 312 IPR001611 GO:0005515(InterPro)
Sed01g1250 1004 Pfam Leucine Rich Repeat 146 167 IPR001611 GO:0005515(InterPro)
Sed01g1250 1004 Pfam Leucine Rich Repeat 411 430 IPR001611 GO:0005515(InterPro)
Sed01g1250 1004 Pfam Leucine Rich Repeat 243 265 IPR001611 GO:0005515(InterPro)
Sed01g1250 1004 Pfam Leucine Rich Repeat 267 287 IPR001611 GO:0005515(InterPro)
Sed01g1250 1004 Pfam Leucine Rich Repeat 121 143 IPR001611 GO:0005515(InterPro)
Sed01g1250 1004 Gene3D Phosphorylase Kinase; domain 1 662 771 - -
Sed01g1250 1004 SUPERFAMILY RNI-like 289 594 - -
Sed01g1250 1004 SUPERFAMILY L domain-like 43 382 - -
Sed01g1250 1004 SMART serkin_6 692 975 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1250 1004 SUPERFAMILY Protein kinase-like (PK-like) 683 976 IPR011009 -
Sed01g1250 1004 Gene3D Ribonuclease Inhibitor 340 622 IPR032675 -
Sed01g1250 1004 Gene3D Ribonuclease Inhibitor 207 339 IPR032675 -
Sed01g1250 1004 FunFam Receptor-like protein kinase HSL1 672 771 - -
Sed01g1250 1004 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 189 285 - -
Sed01g1250 1004 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 24 979 IPR050647 -
Sed01g1250 1004 Gene3D Ribonuclease Inhibitor 31 206 IPR032675 -
Sed01g1250 1004 FunFam Leucine-rich receptor-like protein kinase family protein 382 623 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1250 Sed-Chr1:9305135 Sed12g1816 Sed-Chr12:29364425 1.10E-122 dispersed
Sed01g1250 Sed-Chr1:9305135 Sed01g2129 Sed-Chr1:16000128 6.80E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78599 PF00069 Pkinase 9.90E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1250 - - - 0.0