Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1263 ATGGCTCACCTCTTCAGAGACCTTACTCTGGGCCATTCCAAGAGAGAGTCCACTCCGCCGCCGCCTTCGCCGCCGCCGTCGATAATGCCCGTCCGCCCTCTCATTTCCGCTCCTGATCTTCCTTCTCCGCTCGGCGACCTCGCTTCTCAACTCTCCGATTCCGATCTCCGCCTCACCGCTTTCGAGATCTTCGTCGCCGCTTGCCGGACGTCCTCCGGCAAGCACCTTTCCTTCACCTCTTCCTCCAATTCAAATCTGGACTCTCCATCTCATCACCACTCTCCGAGCTCCCCTGGATTGCAGCGATCTCTCACTTCAGCCGCCGCTTCCAAGGTTAAGAAGGCATTTGGCCTCAAATCTCCCGGTTCCGGCTCTAAGAAGAGTCCTGGCTCCGGCTCCAGTCAAGGTAAGTCCAGGCGGCCTTTGACCGTCGGCGAGTTGATGAGGATCCAAATGGGGGTTTCTGAGACTGTTGATTCCAGAGTCCGGAGAGCGCTGCTTAGAATTTCTGCTGGCCAGGTTGGAAGAAGAATTGAGTCAGTTGTAGTTCCTCTAGAACTACTGCAGCAGCTCAAGGCTTCAGATTTTACAGATCATCAAGAGTATGATGCTTGGCAAAAGCGAACATTGAAGGTTTTAGAAGCCGGTCTCCTTTTGCATCCTAAAATCCCTGTTGATAAGTCAAATGCTACAGGACAGCGGCTAAAGCAAATAATTCATGCAGCATTAGATAGGCCAATTGAAACTGGGAGAAATAATGAGCCTATGCAAGTTCTTCGAAGTGCTGTCATGACCCTTGCTTCCAGAACATTGGATGGATCACTGAACGAGGTATGCCACTGGGCAGATGGGATGCCTCTGAATCTCCGACTTTACGAGATGCTCCTTGAGGCCTGTTTTGATGCACACGATGAAACGTCTATCATTGAAGAAATTGATGAACTCATGGAGCACATCAAGAAGACTTGGGGAATTCTTGGGTTGAACCAAATGTTACATAATCTTTGTTTTACCTGGGTTTTGTTTCACCGTTTTGTTGCTACTGGCCAAGCTGAATTGGATTTGCTTTATGATGCTGATAGTCAGCTTGCAGAAGTTGCTAAAGATGCAAAGACCTCAAAAGATCCTGACTATGCCAAGGTTTTGAGTTCTACACTGAGCTCAATTCTGGGTTGGGCAGAGAAGAGGCTGCTTGCTTATCATGATACATTTGATTCTGGGAATATCGAAACCATGCAAGGCATTGTATCTTTGGGGGTATCTGCAGCTAAAATTTTAGTTGAAGATGTATCAAACGAGTATCGCAGGAGGAGGAAAGGCGAGGTTGATGTTGCACGCAGCAGGATCGACACTTACATTAGATCTTCACTGCGCACTGCTTTTGCTCAGAAAATGGAGAAGGCAGACTTAAGTAGGAGAGCATCTAAAAGCCTGCCAAATTCTCTTCCCCTCCTAGCCATTCTTGCAAAGGATGTTTGTGATCTTGCAGTCAATGAGAAGGGAGTTTTCAGTCCGATACTAAAAAAATGGCATCCATTTGCTGCTGGAGTGGCGGTTGCGACTCTTCATGCTTGTTATGGAAGTGAATTGAAACAATTTGTCTCGGGAATTGGAGAGTTAACACCAGATGCTGTACAAGTGCTTAGAGCCGCTGATAAGCTGGAGAAAGATCTTGTGCAAATAGCAGTAGAAGATTCGGTGGATAGTGATGATGGTGGCAAGGCAATAATTCGCGAGATGCCTCCTTATGAGGCTGATTCTGCAATTGCCAATCTGGTCAAATCGTGGATTAAAACAAGATTGGACAGAATGAAGGAATGGGTGGACCGGAATTTGCAGCAAGAGGCATGGAATCCAAAAGAAAACCAAGGATTTGCACCATCTGCTGTTGAGCTTCTGCGAATAATAGACGAAACACTGGATGCATACTTTCAGCTGCCAATACCAATGCATCCTGCTTTACTTCCTGATTTGGTGGCTGGCCTTGATAGATCTCTTCAGTACTACATACTCAAAGCAAAATCTGGATGTGGATCACGAAATACGTATATTCCAACCATGCCAGCATTGACTAGATGTACCATCGGATCAAAATTCCAAGGTTTTGGGAAGAAGAAAGAAAAACAAGCAAATTCTCAGAGGAAAAATGCCCAAGTTGCAACATTGAATGGGGACAACTCATTGGGGATGCCACAGATCTGTGTTCGTATAAACACATTCCATCGAATTCGAGGTGAGTTGGAGGCCATGGAGAAAAGAATAATCACTCATCTCAGGAATTCCGAATCTGCTCACGCAGAAGATTTTTCTAATGGTGTGGGGAAGAAGTTCGAACTGTCACCTGCTGCTTGTGTGGAAGGAGTTCAGCAACTCAGTGAGGCAGTTGCTTACAAAGTCATTTTCCACGATTTAAGTCATGTATTGTGGGATGGCCTGTATGTAGGGGAGCCCTCATGTTCTAGGATAGCGCCTTTTGTTCAGGAGCTTGAGCGCCATTTGCTCATCATCTCAGACACCATGCATGAAAGAGTTCGAACGAGGATTGTTACAGACATAATGAAAGCTTCTTTTGATGGGTTCTTACTGGTTTTGCTTGCTGGAGGCCCTTCTCGCTCCTTTTCCCGGCAAGACTCCCAAATAATTGAGGACGATTTCAAATTACTCAAAGATTTGTTCTGGGCAAATGGGGACGGATTGCCATTGGAGTTGATTGATAAGTTCTCAACGACTTTGAGAGGCATCATTCCTCTTATGCGAACGGATACAGAGAGTATCATAGAGCGGTTCAAACGCACAACGGTAGAGACATTCGGATCTTCTGCCAAATCCAGGCTTCCATTACCTCCTACTTCTGGGGAATGGAATCCAACTGAACCAAACACTCTTCTACGTGTTCTTTGCTACCGGAATGACGACACAGCTTCAAAGTTTCTCAAGAAAACATACAATTTGCCTAAGAAGTTGTAA 2967 46.01 MAHLFRDLTLGHSKRESTPPPPSPPPSIMPVRPLISAPDLPSPLGDLASQLSDSDLRLTAFEIFVAACRTSSGKHLSFTSSSNSNLDSPSHHHSPSSPGLQRSLTSAAASKVKKAFGLKSPGSGSKKSPGSGSSQGKSRRPLTVGELMRIQMGVSETVDSRVRRALLRISAGQVGRRIESVVVPLELLQQLKASDFTDHQEYDAWQKRTLKVLEAGLLLHPKIPVDKSNATGQRLKQIIHAALDRPIETGRNNEPMQVLRSAVMTLASRTLDGSLNEVCHWADGMPLNLRLYEMLLEACFDAHDETSIIEEIDELMEHIKKTWGILGLNQMLHNLCFTWVLFHRFVATGQAELDLLYDADSQLAEVAKDAKTSKDPDYAKVLSSTLSSILGWAEKRLLAYHDTFDSGNIETMQGIVSLGVSAAKILVEDVSNEYRRRRKGEVDVARSRIDTYIRSSLRTAFAQKMEKADLSRRASKSLPNSLPLLAILAKDVCDLAVNEKGVFSPILKKWHPFAAGVAVATLHACYGSELKQFVSGIGELTPDAVQVLRAADKLEKDLVQIAVEDSVDSDDGGKAIIREMPPYEADSAIANLVKSWIKTRLDRMKEWVDRNLQQEAWNPKENQGFAPSAVELLRIIDETLDAYFQLPIPMHPALLPDLVAGLDRSLQYYILKAKSGCGSRNTYIPTMPALTRCTIGSKFQGFGKKKEKQANSQRKNAQVATLNGDNSLGMPQICVRINTFHRIRGELEAMEKRIITHLRNSESAHAEDFSNGVGKKFELSPAACVEGVQQLSEAVAYKVIFHDLSHVLWDGLYVGEPSCSRIAPFVQELERHLLIISDTMHERVRTRIVTDIMKASFDGFLLVLLAGGPSRSFSRQDSQIIEDDFKLLKDLFWANGDGLPLELIDKFSTTLRGIIPLMRTDTESIIERFKRTTVETFGSSAKSRLPLPPTSGEWNPTEPNTLLRVLCYRNDDTASKFLKKTYNLPKKL 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9372249 9377473 - Sed0004211.1 Sed01g1263 700567

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1263 988 MobiDBLite consensus disorder prediction 1 37 - -
Sed01g1263 988 MobiDBLite consensus disorder prediction 17 32 - -
Sed01g1263 988 ProSiteProfiles Munc13-homology domain 2 (MHD2) profile. 819 929 IPR014772 -
Sed01g1263 988 ProSiteProfiles Munc13-homology domain 1 (MHD1) profile. 545 687 IPR014770 -
Sed01g1263 988 MobiDBLite consensus disorder prediction 124 140 - -
Sed01g1263 988 MobiDBLite consensus disorder prediction 76 145 - -
Sed01g1263 988 PANTHER PROTEIN UNC-13 HOMOLOG 35 987 IPR008528 -
Sed01g1263 988 MobiDBLite consensus disorder prediction 76 108 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1263 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1263 Sed-Chr1:9372249 Sed03g1739 Sed-Chr3:11438817 0.00E+00 dispersed
Sed01g1263 Sed-Chr1:9372249 Sed02g1443 Sed-Chr2:50496716 1.00E-210 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g288 . . . . Bpe02g01184 Bpe02g00248 . . Cmo05g00616 Cmo12g00203 . Cma05g00591 . Car12g00235 Sed01g1263 Cpe07g00213 . Bhi04g00855 Tan02g2557 Cmetu03g1871 . Hepe10g0368 . Lcy13g1418 . . . . . . . . . Cone17ag1126 Cone20ag0596 . . . Cme03g01747 Blo17g00067 . Bda01g00938 Bda13g01330 Bpe14g00518 . Bma01g01343 . . . . . Cma12g00250 . Car05g00535 Cpe11g00517 . . . . . . . . Cla08g01220 Cam08g1679 Cec08g1257 Cco08g1377 Clacu08g1377 . Cre08g1162 Lsi08g01083 . Chy03g01251 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001480 3 2 5 2 4 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 2 3 2 73