Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1267 ATGAGGAACACGAACACAAAGAAAGTTGGCGAAATTTCAGAATCAAAGACGATAAAACGAATCAGAAACCCAGAGGAATCAAATCCAAATTCGAATTGTTCGAGCCGAGTTTACAGAGGAGTTCGGAGAAGGAATTGGGGGAAATGGGTGTCCGAAATCCGGGAGCCACGAAAGAAATCCCGCATTTGGCTGGGGACATTTCCGAGCCCGGAGATGGCGGCGCGTGCACACGACGTGGCGGCCTTCAGCATCAAAGGCAACGCCGCCACCCTCAACTTCCCCGACCTCGTCCACCTCCTCCCCCGCCCCGCCTCCCTCGCCCCCCGCGACGTCCAGGCCGCCGCCGCCAAAGCCGCCCACATGCACCATTTGTCCGACCCCCTCCCCCCCGCCGACCACGACGACCTCACTGAAATCGTCCAGCTTCCTTCCCTTGACACCACCGCCTTCGACCCCTCCCTTGACTCTTTTGTCCTCCTTGACTCGCCGGACGATTCCACCGCCTGGCTTTACCCCCCGCCGTCGCCGCCGCCCTGGGTTCACTCATTCGACGACGGTGAGTTCGGAATGGGATTCATTTCCTCCACTTTTCAAGGGTTGTTTTGGGATTAA 612 58.33 MRNTNTKKVGEISESKTIKRIRNPEESNPNSNCSSRVYRGVRRRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAAFSIKGNAATLNFPDLVHLLPRPASLAPRDVQAAAAKAAHMHHLSDPLPPADHDDLTEIVQLPSLDTTAFDPSLDSFVLLDSPDDSTAWLYPPPSPPPWVHSFDDGEFGMGFISSTFQGLFWD 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9448072 9448828 - Sed0018419.1 Sed01g1267 700571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1267 203 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g1267 203 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g1267 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 24 131 IPR051032 -
Sed01g1267 203 MobiDBLite consensus disorder prediction 7 23 - -
Sed01g1267 203 Pfam AP2 domain 37 86 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g1267 203 FunFam Ethylene-responsive transcription factor 2 36 95 - -
Sed01g1267 203 CDD AP2 38 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g1267 203 MobiDBLite consensus disorder prediction 1 34 - -
Sed01g1267 203 SMART rav1_2 37 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g1267 203 Gene3D AP2/ERF domain 37 95 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g1267 203 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g1267 203 SUPERFAMILY DNA-binding domain 37 95 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1267 Sed-Chr1:9448072 Sed03g0519 Sed-Chr3:3160158 1.00E-51 dispersed
Sed04g1690 Sed-Chr4:31597154 Sed01g1267 Sed-Chr1:9448072 5.10E-33 transposed
Sed01g1267 Sed-Chr1:9448072 Sed03g1479 Sed-Chr3:9448969 3.40E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37189 PF00847 AP2 1.60E-14 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1267 K09286 - csv:101206242 225.328