Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1269 ATGGCCAGAATTGCATTCGGGTGCGCAAGCGAGGCAACCCAACCCGACTGCCTCCGAGCCCTCGTCGTCGAGTTCATCGTCACCTTCCTCTTCGTCTTTGCTGGCGTCGGATCAGCCATAACTGCCAATACACTACTAGCAAACACACTAGTAGGTTTGTTCGCCGTCGCAGTCGCACATGCATTGGTTGTGGCTGTGACGATCTCTGCCGGCCACATTTCGGGTGGCCACCTGAACCCCGCTGTCACTCTCGGCCTCCTTTTCGGTGGCCACATCACGGTCGTCCGATCCGCTCTATATTGGATCATTCAGTTGCTTGCGGCATCGGCTGCTAGTTTTCTGTTATCTTACCTCACTGGAGGATCGCCTATTCCAGTTCATACATTAGCAAGTGGAGTTGGGTACCTCCAGGGAGTGATATGGGAGATTATTCTCACTTTCTCATTGCTGTTCACTGTGTATGGAACCATGGTTGACCCAAAGAAGGGGGCACTTGATGGGTTGGGTCCAATGTTGACTGGGTTCGTGGTGGGAGCCAACATCTTGGCTGGTGGGGCTTTTTCAGGAGCCTCAATGAACCCAGCAAGATCATTTGGGCCAGCTTTGGTGGCTGGAGACTGGACTGACCATTGGGTTTACTGGGTTGGACCTCTGATTGGTGGTGGCCTTGCTGGGTTCATCTATCAAAACTTCTTCATTGAGAGATCTCATGTCCCTCTGCCTAGGCCAGATGATGATGCCTATTAG 747 52.61 MARIAFGCASEATQPDCLRALVVEFIVTFLFVFAGVGSAITANTLLANTLVGLFAVAVAHALVVAVTISAGHISGGHLNPAVTLGLLFGGHITVVRSALYWIIQLLAASAASFLLSYLTGGSPIPVHTLASGVGYLQGVIWEIILTFSLLFTVYGTMVDPKKGALDGLGPMLTGFVVGANILAGGAFSGASMNPARSFGPALVAGDWTDHWVYWVGPLIGGGLAGFIYQNFFIERSHVPLPRPDDDAY 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9472028 9473634 - Sed0025442.1 Sed01g1269 700573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1269 248 ProSitePatterns MIP family signature. 77 85 IPR022357 -
Sed01g1269 248 FunFam Probable aquaporin TIP1-1 2 245 - -
Sed01g1269 248 Pfam Major intrinsic protein 12 228 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g1269 248 SUPERFAMILY Aquaporin-like 12 244 IPR023271 -
Sed01g1269 248 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g1269 248 PRINTS Major intrinsic protein family signature 211 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g1269 248 PRINTS Major intrinsic protein family signature 59 83 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g1269 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g1269 248 PRINTS Major intrinsic protein family signature 141 159 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g1269 248 PRINTS Major intrinsic protein family signature 96 115 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g1269 248 PANTHER AQUAPORIN-8 1 237 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Sed01g1269 248 Gene3D Glycerol uptake facilitator protein. 2 242 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1269 Sed-Chr1:9472028 Sed01g3988 Sed-Chr1:68982161 6.70E-58 dispersed
Sed01g1269 Sed-Chr1:9472028 Sed03g2041 Sed-Chr3:14307620 1.10E-55 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1269 K09873 - csv:101205380 420.239