Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1278 ATGCAGGCCTCAAGAGCAAGGTTGTTTAAGGAGTACAAAGAGGTTCAAAGAGAAAAGGTAGCAGATCCAGATATAAAATTGGTTTGTGACGATTCAAATATTTTTAAATGGACGGCCCTAATCAAGGGACCCTCAGAGACTCCTTTCGAGGGTGGCGTTTTCCAGCTTGCCTTTTCTGTACCTGAACAATATCCCTTGCAGCCTCCTCAAGTGCGATTCCTAACGAAAATTTTCCATCCAAATGTTCATTTCAAGACGGGTGAGATCTGCCTCGATATATTGAAGAATGCTTGGAGCCCAGCATGGACTCTGCAATCTGTTTGTAGGGCTATAATTGCTTTGATGGCTCATCCCGAACCCGACAGTCCGCTAAACTGTGATTCTGGAAATCTTCTGCGTTCGGGCGATGTCCGAGGGTATCAATCCATGGCAAGGATGTACACAAGGCTTGCTGCCATGCCCAAAAAGGGTTGA 474 45.78 MQASRARLFKEYKEVQREKVADPDIKLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9529671 9535370 - Sed0027283.3 Sed01g1278 700582

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1278 157 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 3 153 IPR000608 -
Sed01g1278 157 Pfam Ubiquitin-conjugating enzyme 7 146 IPR000608 -
Sed01g1278 157 SUPERFAMILY UBC-like 4 153 IPR016135 -
Sed01g1278 157 Gene3D Ubiquitin Conjugating Enzyme 1 152 IPR016135 -
Sed01g1278 157 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 134 IPR050113 -
Sed01g1278 157 SMART ubc_7 6 153 - -
Sed01g1278 157 CDD UBCc 7 148 IPR000608 -
Sed01g1278 157 FunFam protein PEROXIN-4 isoform X1 1 152 - -
Sed01g1278 157 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 94 IPR023313 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1278 K10689 - - csv:101204889 322.783
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1276 Sed-Chr1:9529671 Sed01g1278 Sed-Chr1:9529671 1.20E-89 dispersed
Sed01g1278 Sed-Chr1:9529671 Sed03g1490 Sed-Chr3:9528097 9.70E-87 dispersed
Sed01g1277 Sed-Chr1:9529671 Sed01g1278 Sed-Chr1:9529671 1.20E-89 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g317 Blo01g01771 . . Bda03g00426 . Bpe02g00173 . Bma01g02552 Cmo05g00625 Cmo12g00213 . Cma05g00599 . Car12g00244 Sed01g1278 Cpe07g00224 . Bhi04g00831 Tan02g2574 Cmetu03g0651 . Hepe10g0349 . Lcy13g1394 . . . . . . . . . . . . . . Cme03g01732 . . . . . Bpe04g00392 . . . . . . Cma12g00260 . Car05g00542 Cpe11g00523 . . . . . . . . Cla08g01231 . . . . . . Lsi08g01094 . Chy03g01238 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011133 1 1 1 0 2 0 2 0 0 1 1 0 1 1 1 2 0 1 2 0 1 1 1 1 1 1 1 5 1 1 31