Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1286 ATGGAGAATTCTTCTCTCGATCAAGAAACCGTCAAGAAAGTGCTCCGTCAGGTCGAGTTCTATTTCAGTGACAGCAATCTTCCGAGAGATGGTTTTCTCAAGAATACCATCAGCGAAAGTCCCGATGGAATGGTGGATTTGTCTTTAATTTGTACGTTTTCTCGGATGAAAAGCCATCTTCATTTGGAACAGAACGTGAAACCAGAAGAGGTTCCAGAAGAGACTCTTAAGGCTGTTGCTGAAACTTTAAAAAGCTCTTCATCTATCAAAGTTTCTGAAGATGGGAAGAAGATTGGCAGAACTACTGAACTTGCAAAGCCTGAGGAGATGATAGAGCAGTTGGATGATAGAACTATAGCTGCATCACCATTTGAATATGATGTCAAGCTTGAAGATGTTGAAGCTTTCTTTGGTCTAATTGCAAAGGTTAACAGTGTGAGGCTTCCCCGTCATGTTTCGGATAAACGGGTATTCTGTGGAACTGCTTTGGTAGAATTTTCTACCGAAGAAGATGCAGAAAAAGTTATGGCGGAAAGCTTGCTTTTTGCCGGTGCCAAATTAGAATTGAAACCAAAGAGAGATTTTGATGAGGAAAGAGCAAAAGAGACGGAGAAGTTTGAAAGTTCTCAGTCAAACCCGAAGAATAATCATTCCTCGGAAGCGAACTACCCGAAAGGCTTACTGGTCTCTTTTACATTGAAAAAGCTGTCAGCTGGAAGTTCCGCTGAGGAAAATGGTTCTCATGATGCAGCCACTGATAAGACTGAAAGCAAAGAAGATGAAGGATTAGATTCTTCAAAGAATGACTCTGAGAAAACTGAGGAAACAGGGGAAGCAAATGTGGGCAAGGATGAAAAGATTCCGAAAAGTTCTGATGATAAGAAAAATGATTCAGGCAATGAAGGAAAACCTGACGTGGAAGATCAGTCTATGGAGGAAGATCCCATTGATGAACACAAAGAGGCTGAAGGAAAAAAATCCTCATTCGCATTGTCCATAAACAACAAGAATGTTGTTTCACGCGAGGATTTGAAGGATATTTTCCAGAAGTTTGGATGTGTCAAGTACGTTGATTTTAAGATTGGAGAAGAGACGGGTTATATCAGGTTTGAGGAGCCTGAAGCTGCACAGAAAGCTCGTGCGGCTGCAGTTCTTGCGGAACAAGGGGGACTGGCTGTGAAGAATTTTATAGCCACTTTAGAACCAGTGTCAGGTGACGCTGAGAAGGAGTATTGGAAAGCACTTCGCAGCGGTCAAGATAAGCGTCAACGCGATTTTAAGGGCAACCGCGGGAGGGGTGGTAAATTCAACAGAGGTGGAAAGCATGGTCGGCCGAGAGGACACGACAACAACCGAGGTCGCCCGTATAAAGCTCAAAAAGTTTGA 1386 42.93 MENSSLDQETVKKVLRQVEFYFSDSNLPRDGFLKNTISESPDGMVDLSLICTFSRMKSHLHLEQNVKPEEVPEETLKAVAETLKSSSSIKVSEDGKKIGRTTELAKPEEMIEQLDDRTIAASPFEYDVKLEDVEAFFGLIAKVNSVRLPRHVSDKRVFCGTALVEFSTEEDAEKVMAESLLFAGAKLELKPKRDFDEERAKETEKFESSQSNPKNNHSSEANYPKGLLVSFTLKKLSAGSSAEENGSHDAATDKTESKEDEGLDSSKNDSEKTEETGEANVGKDEKIPKSSDDKKNDSGNEGKPDVEDQSMEEDPIDEHKEAEGKKSSFALSINNKNVVSREDLKDIFQKFGCVKYVDFKIGEETGYIRFEEPEAAQKARAAAVLAEQGGLAVKNFIATLEPVSGDAEKEYWKALRSGQDKRQRDFKGNRGRGGKFNRGGKHGRPRGHDNNRGRPYKAQKV 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9566269 9571649 - Sed0010239.1 Sed01g1286 700590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1286 461 Gene3D - 316 430 IPR012677 -
Sed01g1286 461 MobiDBLite consensus disorder prediction 194 223 - -
Sed01g1286 461 MobiDBLite consensus disorder prediction 443 461 - -
Sed01g1286 461 ProSiteProfiles xRRM domain profile. 320 444 IPR014886 GO:0003723(InterPro)
Sed01g1286 461 FunFam La protein 2 6 107 - -
Sed01g1286 461 PRINTS Lupus La protein signature 158 176 IPR002344 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006396(InterPro)|GO:1990904(InterPro)
Sed01g1286 461 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006396(InterPro)|GO:1990904(InterPro)
Sed01g1286 461 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006396(InterPro)|GO:1990904(InterPro)
Sed01g1286 461 MobiDBLite consensus disorder prediction 194 208 - -
Sed01g1286 461 MobiDBLite consensus disorder prediction 247 306 - -
Sed01g1286 461 CDD RRM1_La 118 190 - -
Sed01g1286 461 Pfam La domain 15 59 IPR006630 -
Sed01g1286 461 SMART rrm1_1 330 401 IPR000504 GO:0003723(InterPro)
Sed01g1286 461 SMART rrm1_1 118 190 IPR000504 GO:0003723(InterPro)
Sed01g1286 461 CDD LA_like_plant 10 100 - -
Sed01g1286 461 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 202 IPR000504 GO:0003723(InterPro)
Sed01g1286 461 SMART la 8 101 IPR006630 -
Sed01g1286 461 Pfam RNA binding motif 336 429 IPR014886 GO:0003723(InterPro)
Sed01g1286 461 MobiDBLite consensus disorder prediction 209 223 - -
Sed01g1286 461 Gene3D - 2 105 IPR036388 -
Sed01g1286 461 Gene3D - 110 207 IPR012677 -
Sed01g1286 461 MobiDBLite consensus disorder prediction 415 461 - -
Sed01g1286 461 SUPERFAMILY RNA-binding domain, RBD 116 381 IPR035979 GO:0003676(InterPro)
Sed01g1286 461 MobiDBLite consensus disorder prediction 239 330 - -
Sed01g1286 461 ProSiteProfiles La-type HTH domain profile. 4 108 IPR006630 -
Sed01g1286 461 Pfam RNA recognition motif 125 177 IPR000504 GO:0003723(InterPro)
Sed01g1286 461 SUPERFAMILY Winged helix DNA-binding domain 8 103 IPR036390 -
Sed01g1286 461 PANTHER LUPUS LA PROTEIN-RELATED 10 340 IPR045180 GO:0003723(PANTHER)
Sed01g1286 461 MobiDBLite consensus disorder prediction 415 432 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1286 K11090 - - csv:101204162 654.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1286 Sed-Chr1:9566269 Sed03g1495 Sed-Chr3:9552753 1.50E-156 dispersed
Sed01g1286 Sed-Chr1:9566269 Sed03g1494 Sed-Chr3:9552753 9.50E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g328 . . . . . . . . Cmo05g00630 Cmo12g00218 . Cma05g00604 . Car12g00248 Sed01g1286 Cpe07g00227 . Bhi04g00824 Tan02g2579 Cmetu03g0669 . Hepe10g0345 . Lcy13g1390 . . . . . . . . . . . . . . Cme03g01728 . . . Bda13g01316 Bpe14g00532 . . Bma02g00072 . . . . Cma12g00264 . Car05g00546 Cpe11g00527 . . . . . . . . Cla08g01236 Cam08g1693 Cec08g1272 Cco08g1393 Clacu08g1390 . Cre08g1175 Lsi08g01099 . Chy03g01232 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009894 1 1 0 1 1 1 2 1 0 1 1 0 2 1 1 2 1 3 2 0 1 1 1 0 1 1 1 3 1 1 33