Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1291 ATGAAGCGCAGCGCCTCCCAGTTGGCTTTCGAAGAGTTCATCGAAAACACATCCGCCGCCGCCGCCGATCCCTCCACCTTCTTCCCCGATATTGATTTCAATTTCTTCTTCAAAAATAATCCGGAAATAATGGAGGCGATTGTTAACTGTGGAGGTGGGGTGGGGGAGGGTCCTTTATGGACACAGAATCCCACTCCTAAGCTTTCGAGCATTTCAGGCACTATAGATTCCCACTCTTCCATTGTGAGCAGCCCAACATCAGGCAGCAATTTGTTGATGGGCAGTGAACAACAAATTAGAGGCAACAACAATAATAATAGTGGGTCCTCTGAGGATCAATCTGATGATGAAATTGAAGCTGGCTCTTCTCAACAAAACCCTCTTGCTTTGAAGAAAATCAGAAGAATGATCTCGAATAGAGACTCTGCGAGAAGATCAAGACGACGAAAACAAGCTTATTTGGTTGAACTCGAGAACCAGGTGAAAGAGCTGAAAGGAGAACATGAAACATTGTTCAACCAACTTTTAGACGTGACTCAGCAATACCGTGATGCCAATACAAACAACCGAGTGCTTAAATCGGATGTTGACGCAATGAGAGCAAAGGTAAAGTTGGCTGAAGATACACTTGCTAGAGGGCCAATGACTTGCAGCAGCTTGAATCAGCTGCTGCAGTGTCACTTGAGCATGCCGCAGTCGCTAACAGCTCTGCAGCGGATGTCGAACATTCCATCGCCACTTGGTCTTCCTAAAGTCGATGCTTCTTACTCCGGCGTGACGATGTCGGGTCAGAATCCAACTACCACGGGGCTCGTAAACTCAGATATGCATATCGAAACTGGAATAGCCAGTGAGGCTGTTAGCTGTGTTTCTGAGGTTTGGCCAAGAAATTAG 894 46.53 MKRSASQLAFEEFIENTSAAAADPSTFFPDIDFNFFFKNNPEIMEAIVNCGGGVGEGPLWTQNPTPKLSSISGTIDSHSSIVSSPTSGSNLLMGSEQQIRGNNNNNSGSSEDQSDDEIEAGSSQQNPLALKKIRRMISNRDSARRSRRRKQAYLVELENQVKELKGEHETLFNQLLDVTQQYRDANTNNRVLKSDVDAMRAKVKLAEDTLARGPMTCSSLNQLLQCHLSMPQSLTALQRMSNIPSPLGLPKVDASYSGVTMSGQNPTTTGLVNSDMHIETGIASEAVSCVSEVWPRN 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9641011 9647528 - Sed0011676.1 Sed01g1291 700595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1291 297 Pfam bZIP transcription factor 129 182 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g1291 297 SMART brlzneu 127 191 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g1291 297 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 129 192 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g1291 297 MobiDBLite consensus disorder prediction 70 130 - -
Sed01g1291 297 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 134 149 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g1291 297 Gene3D - 130 186 - -
Sed01g1291 297 FunFam BZIP transcription factor 129 181 - -
Sed01g1291 297 SUPERFAMILY Leucine zipper domain 130 182 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g1291 297 PANTHER BZIP TRANSCRIPTION FACTOR RISBZ3-RELATED 1 295 IPR044168 GO:0003700(InterPro)
Sed01g1291 297 Coils Coil 147 174 - -
Sed01g1291 297 MobiDBLite consensus disorder prediction 70 111 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1291 K25784 - - csv:101210908 348.977
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1291 Sed-Chr1:9641011 Sed08g1618 Sed-Chr8:31294741 1.00E-20 dispersed
Sed01g1291 Sed-Chr1:9641011 Sed03g1507 Sed-Chr3:9632838 9.70E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g231 . . . . . . . . . . . . . . Sed01g1291 . . Bhi04g01129 Tan02g2590 Cmetu03g1692 . . . . . . . . . . . . . Cone17ag1096 Cone20ag0619 . . . Cme03g01717 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01246 Cam08g1704 Cec08g1284 Cco08g1405 Clacu08g1401 . Cre08g1186 Lsi08g01109 Csa02g02299 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006028 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37193 PF00170 bZIP_1 2.90E-14 CL0018 Sed TF