Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1298 ATGGCGGCGGATGGGAAGGGGAAGAGGAGGAGTATAGAGGATTTGGTGTCGGCGACCAGGTCGTTGAGGGTTAGTTTAGAGAAATCTAGGGATTTAGGGTTTGCGTTGCAGAAAGCTGGGTTGAGATTGGGGGACATTAGCCATAGATTGCCGACTTTAGAAGCGGCCGTTCGGCCTATTCGTGCCGATAAGGAAGCTCTTGTTGCGGTCGGTGGCCATATAAATCGAGCTGTTGGCCCGGCTGCGGCGGTGCTTAAGGTTTTTGATGCAGTTCATGGCCTTGAGAAGTCTCTGTTATCGGATCCGAGGAATGATCTCCCTGGTTATTTGTCGGTGTTGAAACGTATGGAAGAGGCATTGAGGTTTTTGGGAGATAATTGTGGATTGGCAATTCAGTGGTTGGAGGATATAGTCGAGTATTTGGAAGATAATACTGTTGCGGATGAGAGATATCTTGCTAATTTGAAGCAATCATTGAAAGTTTTGAGGGATTTGCAGAGCGATGAGGAGAAGACTCAGCTCGATGGGGGGCTTTTGAATGCTGCTTTAGATAAACTAGAGGATGAGTTTCGGCGTCTTTTAATGGAGCACAGTGTGCCCCTTCCCATGGCTTCTTCCTCGTCACTCGGTGACCAAGCTTGCATTGCTCCATCTCCATTGCCCGTGACTGTTATTCAGAAATTGCAGGCTATTCTTGGGAGATTGATTGCTAATAAACGACTTGAGAGATGCATATCCATTTATGTTGAAGTTAGGAGTTCTAATGTTAGGGCTAGTTTGCAGGCTCTTGATTTGGATTACTTGGAGATATCGGTCTCTGAGTTCAATGATGTGCAGAGCATTGAGGGGAACATTGCAAAATGGGGAAAGCATTTGGAATTTGCAGTGAAACACTTGTTTGAGGCTGAGTTCAAGCTTTGTAATGATGTTTTTGAGAGGATTGGATTGGATGTTTGGATGGGCTGTTTTGCAAAGATAGCAACACAAGCAGGTATTCTTGCATTTCTTCAATTCGGGAAAACTGTAACAGAGAGCAAGAATGATCCTATTAAGCTATTGAAGTTGTTAGATATATTTACATCCTTGAACAAACTAAGGCTGGACTTTAATAGGCTTTTCGGTGGGTCTGCGTGTTTGGAAATTCAAAATCTAACTAGGGATCTCATTAAGAGAGTTATCGATGGCGCGGCTGAGATTTTCTGGGAACTGTTAGTTCAGGTAGAGTTACAGAGGAAAAATTCTCCTCCTTTAGATGGGGCAGTTCCAAGGTTGGTGAGCTTCATTATTGATTACAGTAATAAACTGCTCAGTGATGATTATCGACCGATTCTAGCCCAGGCCCTCGTCATTCATCGGAGTTGGAAGAAAGAAAAATTCCAAGAGGGCCTTCTTATCGGTGAGGTTATGAACCTTGTTAAAGCCATTGAGCAGAATCTGGAGACTTGGATAAAGGCTTATGAAGATTCTACCTTGTCGAATTTTTTCGCAATGAACAATCATTGGCATCTATACAAGAACCTCAAAGGAACAAAAGTCGGAGACATGATAGGAGAGAAATTGAAGGAACATGAACAATACAAGGATTACTATGCTACAGTTTTCTTGAGAGATAGCTGGAGTAAACTTCCTAGCCATTTGAGCAGGGAGGGTTTGATTATGTTCTCTGGTGGGCGAGCTACTGCTCGTGATCTAGTCAAGAAACGTCTAAAGACATTCAATGAAGCTTTTGAAGACATGTACAAGAAGCAGTCAAACTGGGTTATAACTGACAAAGAATTGAGAGAGAAGACATGCCAACTTATAGTTCAAACAATCGTGCCGGTATATCGCAGCTATATGCAGAATTATGGCCCCCTCGTCGAGCAAGATGCTAGTTCTAGTAAGTATGCAAAGTACACCGTGCAGAATCTGGAAAAAATGTTATTGTCTCTTTATCAGCCGAAGCCACTTAGGTTCAGCAGCCTTAAAGTTAGGCAGACTAGTGGGAAATTCGATCATCGTCGTTCCAACTCCATGGCTATGTAA 2025 43.21 MAADGKGKRRSIEDLVSATRSLRVSLEKSRDLGFALQKAGLRLGDISHRLPTLEAAVRPIRADKEALVAVGGHINRAVGPAAAVLKVFDAVHGLEKSLLSDPRNDLPGYLSVLKRMEEALRFLGDNCGLAIQWLEDIVEYLEDNTVADERYLANLKQSLKVLRDLQSDEEKTQLDGGLLNAALDKLEDEFRRLLMEHSVPLPMASSSSLGDQACIAPSPLPVTVIQKLQAILGRLIANKRLERCISIYVEVRSSNVRASLQALDLDYLEISVSEFNDVQSIEGNIAKWGKHLEFAVKHLFEAEFKLCNDVFERIGLDVWMGCFAKIATQAGILAFLQFGKTVTESKNDPIKLLKLLDIFTSLNKLRLDFNRLFGGSACLEIQNLTRDLIKRVIDGAAEIFWELLVQVELQRKNSPPLDGAVPRLVSFIIDYSNKLLSDDYRPILAQALVIHRSWKKEKFQEGLLIGEVMNLVKAIEQNLETWIKAYEDSTLSNFFAMNNHWHLYKNLKGTKVGDMIGEKLKEHEQYKDYYATVFLRDSWSKLPSHLSREGLIMFSGGRATARDLVKKRLKTFNEAFEDMYKKQSNWVITDKELREKTCQLIVQTIVPVYRSYMQNYGPLVEQDASSSKYAKYTVQNLEKMLLSLYQPKPLRFSSLKVRQTSGKFDHRRSNSMAM 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9706791 9709925 + Sed0004936.1 Sed01g1298 700602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1298 674 FunFam Exocyst subunit Exo70 family protein 134 651 - -
Sed01g1298 674 Pfam Exocyst complex component Exo70 N-terminal 79 194 - -
Sed01g1298 674 Gene3D Exocyst complex component Exo70 135 651 - -
Sed01g1298 674 SUPERFAMILY Cullin repeat-like 84 645 IPR016159 -
Sed01g1298 674 PANTHER EXOCYST COMPLEX PROTEIN EXO70 100 646 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Sed01g1298 674 Pfam Exo70 exocyst complex subunit C-terminal 287 642 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1298 Sed-Chr1:9706791 Sed07g2172 Sed-Chr7:37253760 4.60E-61 dispersed
Sed04g2352 Sed-Chr4:37014516 Sed01g1298 Sed-Chr1:9706791 1.10E-174 transposed
Sed11g0918 Sed-Chr11:22565168 Sed01g1298 Sed-Chr1:9706791 6.30E-61 transposed
Sed01g1298 Sed-Chr1:9706791 Sed03g1531 Sed-Chr3:9740991 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1298 K07195 - csv:101207478 1207.59