Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1309 ATGGATTTCGTGCTTGCGAATTGCACGCATGCCGTTTCGTTTTCTGCTAAGCAACGCAGCTTGAAAGGGAGGAGAACGCTCGTGCGAGGAAGGAATCGGAGGGTTTCTGCGGTTAGGATTTCGAATTCTGCAGCGGAAGTCTCCGGCAGTAGAGCTGCGGCGGTGGCCGCGGCGAGTGGAAGAAGCGATGGTTCCGGTGAGAGTAAGGATTGGCTGGTGCCGAAATCTAGTACTGCTTTGGAGTTGCTGGATATCGAGCGCGGTGTTTGCATACCATTTCGCAAGTATTCTCCCGAGACAGTGAGAAGTAAGGTATTGGAATCTAGAGGAGCAGTCTTGTCTCTCATTTCTCGCGGTGTGGAGATAGTTTGGAATCTCGGATTATACTGGTCTACATTGATGTATGATTGCTTTGTTGGAAGGGATGAAGAAGTTGTTCCATTTCGTGCTCAGCAGCTCAGAAAGCTCTTGTGTGATTTGGGACCTTCGTTTGTCAAAGCTGGTCAGGTTCTTGCCAACAGACCTGATATTATCAGAGAGGATTATATGAATGAACTTTGCATTCTTCAAGATGATGTTCCATCTTTTCCAAATGAGGTTGCATTCAGTATCATAGAAGAGGAACTGGGTCGTCCCCTTGAATCTGTTTTTAGCAAAATTTCATCACGGACAATAGCTGCTGCAAGCTTGGGTCAAGTTTACCGAGCAACTCTGCGAGACTCTGGCGAGGATGTTGCCATCAAGGTTCAAAGGCCTAAGATCGAGCCAATAATTTATCAGGACCTTTTTCTCTTCCGGACACTTGCTTCTTTCTTAAATGGCATCAGTCTACAAAAACTTGGGTGTAATGCCGAGCTCATAGTTGATGAATTTGGTGAGAAGCTATTGGAGGAGCTTGATTATACTCTGGAAGCACGAAATCTTGAGGATTTTCTTGAAAACTTCAAAAATGACCCCACTGTAAAAATTCCTCGTGTCTACAAAAGCCTATCTGGTTCACGAGTTTTGGTCATGGAATGGATTGATGGTATCCGCTGCACTGACCCACAGGCTGTTAAGAATGCTGGCATTGATGTCGATGGATTTTTAACTGTTGGAGTTAGTGCAGCATTGCGGCAATTGCTAGAATTTGGGTTATTTCATGGCGATCCCCATCCTGGAAACGTTTTTGCAATGCGTGATGGACGTATTGCATATGTGGATTTTGGAAATGTTGCTGTGCTCAGTCAGCAAAATAAACAGATCTTGATTGATGCTGTCGTGCATGCTGTAAACGAGGATTATGCTGAAATGGCAAATGACTTTACCAGGCTCGGGTTTCTGGCCCCTGGAACAGACGTTGCTCCTATCATTCCAGCATTGGAAGCAATTTGGCAAAATTCTTCAGGGAAAGGGTTATCTGATTTTAATTTCCGAAGTGTCACTGGAAAGTTTAATCAGCTGGTCTATAATTATCCTATCCGAATACCTGAGAGGTTTTCTCTTGTTATCCGATCTCTACTGACGCAAGAGGGAATTTGTTTTACTCTCAAGCCCGACTTCAAATTTCTTGAGGTTGCATATCCATATGTCGCAAAGCGCCTTTTGACGGATCCAAACCCTGCTTTGCGTGAACGCCTCATTCAGGTTTTATTCAAAGATGGAATGTTCCAATGGAAGCGTCTCGAAAATCTTATAGTACTTGCTAAAGAAAACGTAGTTAAGATGAGCAGTAACCCAGCATTGCAGAAGAAGGACCTGCAAGGTTCCAGACAAGTTGAGAGAAAACTTGATCTCAAAGATACAATCAAAGACGGGGCTCGCCTATTTCTTCTCGACGAAGGAATTCGCCGACAGTTGCTTCTTGCTTTGACCGAAGACTCGCAGCTTCATGTTCAAGAGCTCGTAGACGTCTACAGATTACTTGAAGATCAGATAGACATTCCATCAATGGCTTTGGAAGTAGCCCGAGATTTTCCAACAGTCGTTCGAGACCTCATGCTTGCTTGGAGTGAATCCATTCTATCAGACAGATAA 2016 44.44 MDFVLANCTHAVSFSAKQRSLKGRRTLVRGRNRRVSAVRISNSAAEVSGSRAAAVAAASGRSDGSGESKDWLVPKSSTALELLDIERGVCIPFRKYSPETVRSKVLESRGAVLSLISRGVEIVWNLGLYWSTLMYDCFVGRDEEVVPFRAQQLRKLLCDLGPSFVKAGQVLANRPDIIREDYMNELCILQDDVPSFPNEVAFSIIEEELGRPLESVFSKISSRTIAAASLGQVYRATLRDSGEDVAIKVQRPKIEPIIYQDLFLFRTLASFLNGISLQKLGCNAELIVDEFGEKLLEELDYTLEARNLEDFLENFKNDPTVKIPRVYKSLSGSRVLVMEWIDGIRCTDPQAVKNAGIDVDGFLTVGVSAALRQLLEFGLFHGDPHPGNVFAMRDGRIAYVDFGNVAVLSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAPGTDVAPIIPALEAIWQNSSGKGLSDFNFRSVTGKFNQLVYNYPIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQVLFKDGMFQWKRLENLIVLAKENVVKMSSNPALQKKDLQGSRQVERKLDLKDTIKDGARLFLLDEGIRRQLLLALTEDSQLHVQELVDVYRLLEDQIDIPSMALEVARDFPTVVRDLMLAWSESILSDR 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9793773 9799319 - Sed0011591.1 Sed01g1309 700613

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1309 671 CDD ABC1_ADCK3-like 189 435 - -
Sed01g1309 671 Gene3D Transferase(Phosphotransferase) domain 1 217 416 - -
Sed01g1309 671 ProSiteProfiles Protein kinase domain profile. 219 550 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1309 671 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 34 629 IPR050154 -
Sed01g1309 671 SUPERFAMILY Protein kinase-like (PK-like) 190 430 IPR011009 -
Sed01g1309 671 Pfam ABC1 atypical kinase-like domain 189 433 IPR004147 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1309 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1309 Sed-Chr1:9793773 Sed03g1551 Sed-Chr3:9814232 0.00E+00 dispersed
Sed04g0317 Sed-Chr4:2401861 Sed01g1309 Sed-Chr1:9793773 8.60E-42 transposed
Sed01g1309 Sed-Chr1:9793773 Sed03g1549 Sed-Chr3:9814232 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g213 Blo01g01345 . Bda01g00706 . . . Bma04g00312 Bma01g02132 . . . Cma05g00634 . . Sed01g1309 . . Bhi04g01074 Tan02g2645 Cmetu03g0988 . Hepe10g0312 . Lcy13g1339 . . . . . . . Cone4ag1851 Cone7ag1756 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy03g01187 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007163 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 2 1 37